miRNA display CGI


Results 61 - 80 of 698 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 48943 0.74 0.575241
Target:  5'- ----cAGGCGCGCGACuggacCGC-CCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGua---GCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 67331 0.74 0.554702
Target:  5'- gCGUAUAGGUGCaGCaGCAUCGCGCggacguggCCCu -3'
miRNA:   3'- -GUAUAUUCGCG-CGcUGUAGCGCG--------GGG- -5'
6665 5' -53.9 NC_001847.1 + 47872 0.74 0.554702
Target:  5'- ----cGGGCGCGCG-CAgcgcgCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUa----GCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 14449 0.74 0.554702
Target:  5'- ----cGAGCGCGCGGCcgCGCuGCUCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 107198 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 22102 0.74 0.584542
Target:  5'- ----cAGGCGCgccggggGCGACAgcgggCGCGCCCUg -3'
miRNA:   3'- guauaUUCGCG-------CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 87270 0.74 0.585577
Target:  5'- ----cGGGCGCGCGcGCGcugCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCGC-UGUa--GCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 106302 0.74 0.606347
Target:  5'- ------cGCGCGCGGCcgCGCGUUCUa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 4385 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 99210 0.74 0.585577
Target:  5'- -----cGGcCGCGCGGCggCGCGCCgCCa -3'
miRNA:   3'- guauauUC-GCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 56502 0.74 0.585577
Target:  5'- ------cGCGCGCGAC--CGCGCCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 127239 0.74 0.554702
Target:  5'- ----gAAGCG-GCGGCcgccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGua---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 29342 0.74 0.575241
Target:  5'- ------cGCGCGCGGCuccagcgCGCGgCCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-----GCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 86731 0.74 0.564947
Target:  5'- ----cGAGCGC-CGGCGaCGCGUCCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120697 0.74 0.554702
Target:  5'- ----cGAGCaGCGCGGCcgCGCGCUCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 22266 0.74 0.595948
Target:  5'- ----cGAGCGCGCGGCGcagCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGCUGUa--GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 47217 0.74 0.585577
Target:  5'- ------cGUGCGCGGCcgCGCccaGCCCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCG---CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60306 0.73 0.648061
Target:  5'- -----cGGCGgGCGGCAgcgCGCGCgCCa -3'
miRNA:   3'- guauauUCGCgCGCUGUa--GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 56072 0.73 0.658478
Target:  5'- ----gAAGCcuGCGCGGCugagCGCGCCCg -3'
miRNA:   3'- guauaUUCG--CGCGCUGua--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 74489 0.73 0.658478
Target:  5'- ----aGGGCGCggacGCGGCcgCGCGCaCCCu -3'
miRNA:   3'- guauaUUCGCG----CGCUGuaGCGCG-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.