miRNA display CGI


Results 61 - 80 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 124915 0.74 0.584542
Target:  5'- ----cAGGCGCgccggggGCGACAgcgggCGCGCCCUg -3'
miRNA:   3'- guauaUUCGCG-------CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 30200 0.74 0.585577
Target:  5'- -----cGGUGCGCGGCG-CGCGCgCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 56502 0.74 0.585577
Target:  5'- ------cGCGCGCGAC--CGCGCCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 68493 0.74 0.585577
Target:  5'- ----cAAGCGCGCcaGGCAguccacaaaCGCGCCCCc -3'
miRNA:   3'- guauaUUCGCGCG--CUGUa--------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 21175 0.74 0.585577
Target:  5'- ----gGAGCGCuucuGCGGCGaCGCGCCCg -3'
miRNA:   3'- guauaUUCGCG----CGCUGUaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 47217 0.74 0.585577
Target:  5'- ------cGUGCGCGGCcgCGCccaGCCCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCG---CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 87270 0.74 0.585577
Target:  5'- ----cGGGCGCGCGcGCGcugCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCGC-UGUa--GCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 99210 0.74 0.585577
Target:  5'- -----cGGcCGCGCGGCggCGCGCCgCCa -3'
miRNA:   3'- guauauUC-GCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 64876 0.74 0.595948
Target:  5'- ----cAGGCGCGCGccgagagcaacGCcgCGCGCCCg -3'
miRNA:   3'- guauaUUCGCGCGC-----------UGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 41302 0.74 0.595948
Target:  5'- -----uAGUGCGCGACGUUuccgGCGCCgCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUAG----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 125079 0.74 0.595948
Target:  5'- ----cGAGCGCGCGGCGcagCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGCUGUa--GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 96622 0.74 0.595948
Target:  5'- gGUGUAcggccagagcacAGCGCcgGCGACcgCGcCGCCCCc -3'
miRNA:   3'- gUAUAU------------UCGCG--CGCUGuaGC-GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 22266 0.74 0.595948
Target:  5'- ----cGAGCGCGCGGCGcagCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGCUGUa--GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 4385 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 96923 0.74 0.606347
Target:  5'- gCGUAgAGGCGCGCGGCc-CGgGCCuCCg -3'
miRNA:   3'- -GUAUaUUCGCGCGCUGuaGCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 107198 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 106302 0.74 0.606347
Target:  5'- ------cGCGCGCGGCcgCGCGUUCUa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 83460 0.73 0.616765
Target:  5'- -----cGGCGCGCGACGgcgCGCGCguacgccgCCCu -3'
miRNA:   3'- guauauUCGCGCGCUGUa--GCGCG--------GGG- -5'
6665 5' -53.9 NC_001847.1 + 121225 0.73 0.616765
Target:  5'- ------cGCgGCGCGGCAccgaGCGCCCCa -3'
miRNA:   3'- guauauuCG-CGCGCUGUag--CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60656 0.73 0.616765
Target:  5'- ------uGCGCGCGGCcgcGUcCGCGCCCUc -3'
miRNA:   3'- guauauuCGCGCGCUG---UA-GCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.