miRNA display CGI


Results 61 - 80 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 88710 0.66 0.953514
Target:  5'- ------uGCGCGCGcAgAUUGgGCCCUu -3'
miRNA:   3'- guauauuCGCGCGC-UgUAGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 66537 0.66 0.953514
Target:  5'- ----gGGGCGCaGCGAC--CGCGCCg- -3'
miRNA:   3'- guauaUUCGCG-CGCUGuaGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 45254 0.66 0.953108
Target:  5'- ----cGGGCGC-CG-CGUCcccgaagGCGCCCCa -3'
miRNA:   3'- guauaUUCGCGcGCuGUAG-------CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 106544 0.66 0.953108
Target:  5'- -----uAGCGCGCGGCcgccUCGCggaucucggggcaGUCCCa -3'
miRNA:   3'- guauauUCGCGCGCUGu---AGCG-------------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 3731 0.66 0.953108
Target:  5'- -----uAGCGCGCGGCcgccUCGCggaucucggggcaGUCCCa -3'
miRNA:   3'- guauauUCGCGCGCUGu---AGCG-------------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 133913 0.66 0.952289
Target:  5'- gGUGUAccuggccugcgggcGGCGCGCGcuggaGC-UgGCGCCCg -3'
miRNA:   3'- gUAUAU--------------UCGCGCGC-----UGuAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 31100 0.66 0.952289
Target:  5'- gGUGUAccuggccugcgggcGGCGCGCGcuggaGC-UgGCGCCCg -3'
miRNA:   3'- gUAUAU--------------UCGCGCGC-----UGuAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 57172 0.66 0.951043
Target:  5'- ----gGGGCGCGUGuuCAUCgagaacucgaugcgcGCGCCCg -3'
miRNA:   3'- guauaUUCGCGCGCu-GUAG---------------CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 49952 0.66 0.949348
Target:  5'- -----uGGCGCGCGGugcCGCGCaCCUa -3'
miRNA:   3'- guauauUCGCGCGCUguaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 88262 0.66 0.949348
Target:  5'- ----gAAGCgGCGCucGCA-CGCGUCCCg -3'
miRNA:   3'- guauaUUCG-CGCGc-UGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 20190 0.66 0.949348
Target:  5'- uCGUAgac-CGCGgGGCG--GCGCCCCg -3'
miRNA:   3'- -GUAUauucGCGCgCUGUagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 76913 0.66 0.949348
Target:  5'- ----cGAGCucGCGCGcACGUCcCGCCuCCa -3'
miRNA:   3'- guauaUUCG--CGCGC-UGUAGcGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 62435 0.66 0.949348
Target:  5'- --gGUGAGCguguuuucgucgGCGCGGCucUGCGCCgCg -3'
miRNA:   3'- guaUAUUCG------------CGCGCUGuaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 116135 0.66 0.949348
Target:  5'- ----cGGGCGCuGgGGCG-CGCGgCCCg -3'
miRNA:   3'- guauaUUCGCG-CgCUGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 82817 0.66 0.949348
Target:  5'- ----cGGGCGaagGCGACggCGCGaCCCg -3'
miRNA:   3'- guauaUUCGCg--CGCUGuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 11675 0.66 0.949348
Target:  5'- ----aGGGgGCGCuGCAUCG-GCCUCa -3'
miRNA:   3'- guauaUUCgCGCGcUGUAGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 61324 0.66 0.949348
Target:  5'- ------uGCGCGgGGCGgggcgggCGCGCCUa -3'
miRNA:   3'- guauauuCGCGCgCUGUa------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 52020 0.66 0.949348
Target:  5'- ----cAGGCGCGCacuaGCGcUCGCGCCa- -3'
miRNA:   3'- guauaUUCGCGCGc---UGU-AGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 76691 0.66 0.949348
Target:  5'- aAUGUGcuuuguGGCGCGgGAgGagGCGCgCCg -3'
miRNA:   3'- gUAUAU------UCGCGCgCUgUagCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 81910 0.66 0.949348
Target:  5'- ----cGAGC-UGCGGCcUCGCGCaCCUg -3'
miRNA:   3'- guauaUUCGcGCGCUGuAGCGCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.