miRNA display CGI


Results 61 - 80 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 10596 0.67 0.93025
Target:  5'- ------cGCGCGCGGgccggcgcCGgccCGCGCCCUg -3'
miRNA:   3'- guauauuCGCGCGCU--------GUa--GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 10839 0.67 0.924858
Target:  5'- ------uGCGCGCGACGgcggCGCGUggCCg -3'
miRNA:   3'- guauauuCGCGCGCUGUa---GCGCG--GGg -5'
6665 5' -53.9 NC_001847.1 + 10963 0.69 0.83306
Target:  5'- gCAUAUGuacguggcgcGGCGCGCGAaGUCucuugGCGCCUg -3'
miRNA:   3'- -GUAUAU----------UCGCGCGCUgUAG-----CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 11469 0.67 0.93025
Target:  5'- ------cGUGCGCGugG-CGaGCCCCg -3'
miRNA:   3'- guauauuCGCGCGCugUaGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 11675 0.66 0.949348
Target:  5'- ----aGGGgGCGCuGCAUCG-GCCUCa -3'
miRNA:   3'- guauaUUCgCGCGcUGUAGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 12205 0.66 0.934891
Target:  5'- --cGUAGGUgcgcuucuggcuuGCGCGGCG-CGCGCacaCCCg -3'
miRNA:   3'- guaUAUUCG-------------CGCGCUGUaGCGCG---GGG- -5'
6665 5' -53.9 NC_001847.1 + 12819 0.67 0.913327
Target:  5'- -----uGGCGCGCGAgCggCGCGCUUg -3'
miRNA:   3'- guauauUCGCGCGCU-GuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 12908 0.67 0.924858
Target:  5'- ----gAAGCGCGCGc---CGUGCCgCCg -3'
miRNA:   3'- guauaUUCGCGCGCuguaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 12931 0.68 0.894191
Target:  5'- ----gGGGCGCGCGuguCGUCGUGCg-- -3'
miRNA:   3'- guauaUUCGCGCGCu--GUAGCGCGggg -5'
6665 5' -53.9 NC_001847.1 + 12955 0.71 0.769555
Target:  5'- aGUGUGgcGGCGCGCGAugagcaggcCAUgGCGCUgCa -3'
miRNA:   3'- gUAUAU--UCGCGCGCU---------GUAgCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 13121 0.72 0.668873
Target:  5'- ----gGGGCGCGCgGGCGgcgcCGCGCCgCCu -3'
miRNA:   3'- guauaUUCGCGCG-CUGUa---GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 13380 0.66 0.957442
Target:  5'- -----cGGCGCGC-ACGUCcggGCGCgCCg -3'
miRNA:   3'- guauauUCGCGCGcUGUAG---CGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 13935 0.66 0.944941
Target:  5'- ------cGCGcCGCGGCAggggggC-CGCCCCg -3'
miRNA:   3'- guauauuCGC-GCGCUGUa-----GcGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 14449 0.74 0.554702
Target:  5'- ----cGAGCGCGCGGCcgCGCuGCUCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 14453 0.7 0.788476
Target:  5'- ----gGGGUGCGCGGCcgCG-GCCUCu -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 14609 0.67 0.93025
Target:  5'- -----uGGCGCGCGGuCAUCG-GCUCg -3'
miRNA:   3'- guauauUCGCGCGCU-GUAGCgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 14742 0.68 0.900812
Target:  5'- --cAUAcGCGCGCcgGGCcUCGCGCUCg -3'
miRNA:   3'- guaUAUuCGCGCG--CUGuAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 15305 0.68 0.894191
Target:  5'- ------uGCGCGCgGGCGUgCGCGaCCCg -3'
miRNA:   3'- guauauuCGCGCG-CUGUA-GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 15552 0.73 0.648061
Target:  5'- --gGUGcGCGCGCGGcCGUCGgGCCgCg -3'
miRNA:   3'- guaUAUuCGCGCGCU-GUAGCgCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 16086 0.66 0.947175
Target:  5'- -uUGUAcGCGCGCGcgugccggcguaccGCuucccacagcgUGCGCCCCa -3'
miRNA:   3'- guAUAUuCGCGCGC--------------UGua---------GCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.