miRNA display CGI


Results 61 - 80 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 122366 0.73 0.658478
Target:  5'- -----cGGCGUGCGGCAcagCGCGUCCa -3'
miRNA:   3'- guauauUCGCGCGCUGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 122328 0.72 0.689561
Target:  5'- ----cAAGCGCGCcGC-UCGCGCgCCa -3'
miRNA:   3'- guauaUUCGCGCGcUGuAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 122216 0.67 0.913327
Target:  5'- ------cGCaCGaCGACAcgCGCGCCCCc -3'
miRNA:   3'- guauauuCGcGC-GCUGUa-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122018 0.78 0.384629
Target:  5'- ----cAGGCgGCGCGGCGccgcccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGUa------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 121945 0.66 0.944941
Target:  5'- ----aGAGCGuCGCGugGggggaCGCGUCCg -3'
miRNA:   3'- guauaUUCGC-GCGCugUa----GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 121764 0.68 0.887331
Target:  5'- -----cGGCGCGCccgGACGUgCGCGCCg- -3'
miRNA:   3'- guauauUCGCGCG---CUGUA-GCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 121726 0.72 0.689561
Target:  5'- -----cGGCGCGCG-CuggCGCGCCCg -3'
miRNA:   3'- guauauUCGCGCGCuGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 121263 0.66 0.940291
Target:  5'- ----cGGGCGCaccaGCGGCAgugcCGCGUCCg -3'
miRNA:   3'- guauaUUCGCG----CGCUGUa---GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 121225 0.73 0.616765
Target:  5'- ------cGCgGCGCGGCAccgaGCGCCCCa -3'
miRNA:   3'- guauauuCG-CGCGCUGUag--CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 121034 0.67 0.924858
Target:  5'- cCGUGacgAGGUGCGgGugGUCcgccaGCGCCuCCg -3'
miRNA:   3'- -GUAUa--UUCGCGCgCugUAG-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 120980 0.66 0.939812
Target:  5'- --cGUAAGCGCggccgucgcccuaGCGGCcgcccaggcgCGgGCCCCg -3'
miRNA:   3'- guaUAUUCGCG-------------CGCUGua--------GCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120697 0.74 0.554702
Target:  5'- ----cGAGCaGCGCGGCcgCGCGCUCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 120695 0.69 0.849623
Target:  5'- ----gAGGC-CGCGGCcgCGCaCCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120480 0.68 0.887331
Target:  5'- ------uGCaCGcCGACA-CGCGCCCCg -3'
miRNA:   3'- guauauuCGcGC-GCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120122 0.68 0.894191
Target:  5'- -----cGGCGgcCGCGGCucgCGCGgCCCCa -3'
miRNA:   3'- guauauUCGC--GCGCUGua-GCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 118779 0.66 0.957442
Target:  5'- gGUGUGAGCgGCacCGGCAgccgccaGCGCCuCCa -3'
miRNA:   3'- gUAUAUUCG-CGc-GCUGUag-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 118496 0.75 0.528339
Target:  5'- -cUGUAGGCGCGgGGCcccgacggcaaagccGcCGCGCCCCc -3'
miRNA:   3'- guAUAUUCGCGCgCUG---------------UaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 118479 0.72 0.668873
Target:  5'- ----aAGGCuGCGCGACGcgccCGCGCCgCCa -3'
miRNA:   3'- guauaUUCG-CGCGCUGUa---GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 118188 0.72 0.668873
Target:  5'- -----cGGUGCGCGACGgcauCGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUagc-GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 117427 0.66 0.953514
Target:  5'- -------uCGCGCGGC--UGCGCCCUg -3'
miRNA:   3'- guauauucGCGCGCUGuaGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.