miRNA display CGI


Results 61 - 80 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 122366 0.73 0.658478
Target:  5'- -----cGGCGUGCGGCAcagCGCGUCCa -3'
miRNA:   3'- guauauUCGCGCGCUGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 53694 0.77 0.4195
Target:  5'- gAUGUGcGCGCGCGAg--CGCGCCgCCg -3'
miRNA:   3'- gUAUAUuCGCGCGCUguaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 99210 0.74 0.585577
Target:  5'- -----cGGcCGCGCGGCggCGCGCCgCCa -3'
miRNA:   3'- guauauUC-GCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 4385 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 86630 0.73 0.616765
Target:  5'- --cGUAAGCGUGUgggcgGGCcgCGcCGCCCCg -3'
miRNA:   3'- guaUAUUCGCGCG-----CUGuaGC-GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 79668 0.78 0.367928
Target:  5'- cCAUAgcaGGGCagcggcuaGCGCGGCG-CGCGCCCCg -3'
miRNA:   3'- -GUAUa--UUCG--------CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 64754 0.75 0.504425
Target:  5'- cCGUAaucuuGGCcaGCGCGAgcUCGCGCCCCg -3'
miRNA:   3'- -GUAUau---UCG--CGCGCUguAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120697 0.74 0.554702
Target:  5'- ----cGAGCaGCGCGGCcgCGCGCUCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 86731 0.74 0.564947
Target:  5'- ----cGAGCGC-CGGCGaCGCGUCCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 33694 0.75 0.524323
Target:  5'- ------cGCGCgGCGGCAguuucCGCGCCCCc -3'
miRNA:   3'- guauauuCGCG-CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 44805 0.8 0.306232
Target:  5'- ----aAAGCgccgaGCGCGGCAcCGCGCCCCa -3'
miRNA:   3'- guauaUUCG-----CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 85192 0.8 0.306232
Target:  5'- ---cUAGGUGCGCGGCAcCGCGCgCCa -3'
miRNA:   3'- guauAUUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 106410 0.72 0.668873
Target:  5'- ------cGCGCGCGGCGaCGCuGCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGUaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 111359 0.72 0.689561
Target:  5'- ------cGCGCuggGCGACcUCGCGCCCg -3'
miRNA:   3'- guauauuCGCG---CGCUGuAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 104935 0.71 0.720196
Target:  5'- ------cGCGCGCGGCuucggcgCGCGCgCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-----GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 90745 0.71 0.730264
Target:  5'- -----cGGCGCGUGGC--CGgGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUGuaGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 55917 0.72 0.693677
Target:  5'- ----gGAGCGCGCccgugauccgcggccGGCGUCGCGagCCCa -3'
miRNA:   3'- guauaUUCGCGCG---------------CUGUAGCGCg-GGG- -5'
6665 5' -53.9 NC_001847.1 + 91871 0.73 0.657437
Target:  5'- -------aCGCGCGGCGUCGCagcagguGCCCCc -3'
miRNA:   3'- guauauucGCGCGCUGUAGCG-------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 106962 0.72 0.686468
Target:  5'- ----cAGGCGCGCGGCcgCcagguaacccaacgGCGCCUCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaG--------------CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122328 0.72 0.689561
Target:  5'- ----cAAGCGCGCcGC-UCGCGCgCCa -3'
miRNA:   3'- guauaUUCGCGCGcUGuAGCGCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.