miRNA display CGI


Results 81 - 100 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 16209 0.66 0.940291
Target:  5'- ------cGCGCcauGCGGCGUUGCaGCCuCCg -3'
miRNA:   3'- guauauuCGCG---CGCUGUAGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 122871 0.66 0.940291
Target:  5'- --gGUGGGCGCgcuuggacucGCGggacugguggGCAUCGCaGCCCUc -3'
miRNA:   3'- guaUAUUCGCG----------CGC----------UGUAGCG-CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 5199 0.66 0.940291
Target:  5'- ------cGCgaGCGCGGCAagCGCGCCgCg -3'
miRNA:   3'- guauauuCG--CGCGCUGUa-GCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 69020 0.66 0.935394
Target:  5'- --gAUGAGCuGCuGCGguGCGUCGCGCUg- -3'
miRNA:   3'- guaUAUUCG-CG-CGC--UGUAGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 108967 0.66 0.940291
Target:  5'- --gGUGAGCgagcagggagGCGCGGCaAUUGUGUCCa -3'
miRNA:   3'- guaUAUUCG----------CGCGCUG-UAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 33801 0.66 0.940291
Target:  5'- ------uGCGCGCGGCGcccggCGCGCUg- -3'
miRNA:   3'- guauauuCGCGCGCUGUa----GCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 108873 0.66 0.940291
Target:  5'- --gGUGAGCaagcagggagGCGCGGCaAUUGUGUCCa -3'
miRNA:   3'- guaUAUUCG----------CGCGCUG-UAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131647 0.66 0.935394
Target:  5'- ----gGAGCGUGaCGGCGcCGCuGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 18016 0.66 0.953514
Target:  5'- ---uUGGGCGUggGgGGCGUUGCGCCg- -3'
miRNA:   3'- guauAUUCGCG--CgCUGUAGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 28297 0.66 0.953514
Target:  5'- -----cGGCGUGCGugGgugUGUuagGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCugUa--GCG---CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 10264 0.66 0.943572
Target:  5'- --gAUGAGCGgGCGcauaaaaaccgcggGCcgCGCGCUCg -3'
miRNA:   3'- guaUAUUCGCgCGC--------------UGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 18792 0.66 0.940291
Target:  5'- ----cGAGCucCGCGGCGgcggCGCGCgCCa -3'
miRNA:   3'- guauaUUCGc-GCGCUGUa---GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 134150 0.66 0.935394
Target:  5'- ----gGAGCGCGUGcCGcCGCcggcggcggaaGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCG-----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 133913 0.66 0.952289
Target:  5'- gGUGUAccuggccugcgggcGGCGCGCGcuggaGC-UgGCGCCCg -3'
miRNA:   3'- gUAUAU--------------UCGCGCGC-----UGuAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 130510 0.66 0.944941
Target:  5'- ----gAGGCGCGCGAgCGccggCGgGCCgCCc -3'
miRNA:   3'- guauaUUCGCGCGCU-GUa---GCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 60127 0.66 0.944941
Target:  5'- --cGUGAGCGagGgGGCGUCGgCGCCg- -3'
miRNA:   3'- guaUAUUCGCg-CgCUGUAGC-GCGGgg -5'
6665 5' -53.9 NC_001847.1 + 40264 0.66 0.944941
Target:  5'- ----gAAGCGCggauuuGCGAgCugccCGCGCCCCc -3'
miRNA:   3'- guauaUUCGCG------CGCU-Gua--GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 31833 0.66 0.957442
Target:  5'- ----aGAGUGCGagGACccuacguUCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCg-CUGu------AGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 73818 0.66 0.957442
Target:  5'- ---cUAGGCGCGCccgccccGCccCGCGCaCCCg -3'
miRNA:   3'- guauAUUCGCGCGc------UGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 61938 0.66 0.957442
Target:  5'- ------cGCGUcaGCGGCggCGCGgCCCg -3'
miRNA:   3'- guauauuCGCG--CGCUGuaGCGCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.