miRNA display CGI


Results 81 - 100 of 698 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 100954 0.73 0.616765
Target:  5'- ------cGgGCGgGACGUgCGCGCCCCc -3'
miRNA:   3'- guauauuCgCGCgCUGUA-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60656 0.73 0.616765
Target:  5'- ------uGCGCGCGGCcgcGUcCGCGCCCUc -3'
miRNA:   3'- guauauuCGCGCGCUG---UA-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 99693 0.73 0.627196
Target:  5'- -----cGGCGCGCGGCG-CGgGCCgCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUaGCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 122748 0.73 0.627196
Target:  5'- ------uGCGCGCGucaccgaccACA-CGCGCCCCg -3'
miRNA:   3'- guauauuCGCGCGC---------UGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 87068 0.73 0.627196
Target:  5'- -------cCGCGCGGCGU-GCGCCCCc -3'
miRNA:   3'- guauauucGCGCGCUGUAgCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 32380 0.73 0.627196
Target:  5'- -----cGGCGuCGCgGGCGUCGCGCCUUg -3'
miRNA:   3'- guauauUCGC-GCG-CUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 129745 0.73 0.627196
Target:  5'- ---cUGAGCGCGCGGCc-UGUGCCgCCg -3'
miRNA:   3'- guauAUUCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 61267 0.73 0.627196
Target:  5'- ----gGGGCGC-CGGCGgaacugaCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUa------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60749 0.73 0.627196
Target:  5'- ------cGCGCGCGGCGgccgCGCGgucCCCCa -3'
miRNA:   3'- guauauuCGCGCGCUGUa---GCGC---GGGG- -5'
6665 5' -53.9 NC_001847.1 + 56731 0.73 0.627196
Target:  5'- ------cGCGCGCGcCAgcagCGCGCCCg -3'
miRNA:   3'- guauauuCGCGCGCuGUa---GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 16659 0.73 0.637631
Target:  5'- aCGUGgcGGCGCGgGcGCGUCGCGCagCCu -3'
miRNA:   3'- -GUAUauUCGCGCgC-UGUAGCGCGg-GG- -5'
6665 5' -53.9 NC_001847.1 + 90697 0.73 0.637631
Target:  5'- ------cGCGCGCGugccgcGCGcCGCGCCCCc -3'
miRNA:   3'- guauauuCGCGCGC------UGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60306 0.73 0.648061
Target:  5'- -----cGGCGgGCGGCAgcgCGCGCgCCa -3'
miRNA:   3'- guauauUCGCgCGCUGUa--GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 31944 0.73 0.648061
Target:  5'- --gGUAAGCGgacgagccugcCGCGGCGgcggCGgGCCCCg -3'
miRNA:   3'- guaUAUUCGC-----------GCGCUGUa---GCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 33658 0.73 0.648061
Target:  5'- ------cGCGCGCGugGcCGCGgCCCg -3'
miRNA:   3'- guauauuCGCGCGCugUaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 77538 0.73 0.648061
Target:  5'- ----cGAGCGCGagGGCGUgGCGCaCCCu -3'
miRNA:   3'- guauaUUCGCGCg-CUGUAgCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 15552 0.73 0.648061
Target:  5'- --gGUGcGCGCGCGGcCGUCGgGCCgCg -3'
miRNA:   3'- guaUAUuCGCGCGCU-GUAGCgCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 33790 0.73 0.648061
Target:  5'- ----cAAGCGCGCG-CAU-GCaGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUAgCG-CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 85090 0.73 0.648061
Target:  5'- ------cGCGCGCGGacccgcggccgcCAcCGCGCCCCg -3'
miRNA:   3'- guauauuCGCGCGCU------------GUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 91871 0.73 0.657437
Target:  5'- -------aCGCGCGGCGUCGCagcagguGCCCCc -3'
miRNA:   3'- guauauucGCGCGCUGUAGCG-------CGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.