miRNA display CGI


Results 81 - 100 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 104393 0.71 0.759899
Target:  5'- -----cGGCGCGCGcCAgCGCGCCgCu -3'
miRNA:   3'- guauauUCGCGCGCuGUaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 12955 0.71 0.769555
Target:  5'- aGUGUGgcGGCGCGCGAugagcaggcCAUgGCGCUgCa -3'
miRNA:   3'- gUAUAU--UCGCGCGCU---------GUAgCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 79081 0.71 0.769555
Target:  5'- ------cGCGUGCGACGU-GUGCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGUAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 98011 0.71 0.769555
Target:  5'- ----aAGGCcCGCugGGCGUgCGCGCCCCa -3'
miRNA:   3'- guauaUUCGcGCG--CUGUA-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 103812 0.71 0.769555
Target:  5'- -----cGGCG-GCGGCA-CGCGCUCCa -3'
miRNA:   3'- guauauUCGCgCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 5949 0.71 0.769555
Target:  5'- ----cAAGCGCGCGuACGUaCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGC-UGUA-GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 29002 0.71 0.769555
Target:  5'- ----aGAGCGCGCcgugcuGGCGcagcuaUCGCGCCCa -3'
miRNA:   3'- guauaUUCGCGCG------CUGU------AGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 60444 0.71 0.769555
Target:  5'- ------cGCGCGCGuCggCGCuGCCCCc -3'
miRNA:   3'- guauauuCGCGCGCuGuaGCG-CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 74758 0.71 0.769555
Target:  5'- ----gGAGaCGCGguCGGCG-CGCGCCCCc -3'
miRNA:   3'- guauaUUC-GCGC--GCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 107261 0.71 0.769555
Target:  5'- -----cGGCGCacuccGCGACGUCcgcguccucgGCGCCCCc -3'
miRNA:   3'- guauauUCGCG-----CGCUGUAG----------CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 27797 0.7 0.779084
Target:  5'- ----cGGGUGCG-GGCucuggccauUCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCGCgCUGu--------AGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 34272 0.7 0.779084
Target:  5'- -----cGGCGCGCGGCGgcuggGCGCCgCg -3'
miRNA:   3'- guauauUCGCGCGCUGUag---CGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 41822 0.7 0.779084
Target:  5'- ----cGGGCGgGCGGCG-CGgGUCCCa -3'
miRNA:   3'- guauaUUCGCgCGCUGUaGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 65459 0.7 0.779084
Target:  5'- ----cGAGCGC-CGGCccCGCGCCCa -3'
miRNA:   3'- guauaUUCGCGcGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 71921 0.7 0.779084
Target:  5'- -----cGGCGCGCGGCG-CGCGCaCgCg -3'
miRNA:   3'- guauauUCGCGCGCUGUaGCGCG-GgG- -5'
6665 5' -53.9 NC_001847.1 + 29437 0.7 0.779084
Target:  5'- ----cGAGCGCuGgGGCGUgGCGCCgCCc -3'
miRNA:   3'- guauaUUCGCG-CgCUGUAgCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 56691 0.7 0.779084
Target:  5'- aCGUAccuGGCGCGCGGCggcuuuGUCGUGgCCUu -3'
miRNA:   3'- -GUAUau-UCGCGCGCUG------UAGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 31743 0.7 0.788476
Target:  5'- cUAUGUcGAGCgGCGCGugGUCaGCGUgcaCCCg -3'
miRNA:   3'- -GUAUA-UUCG-CGCGCugUAG-CGCG---GGG- -5'
6665 5' -53.9 NC_001847.1 + 46065 0.7 0.788476
Target:  5'- --gAUGGGCGgGCGAaagaGCGCCgCCg -3'
miRNA:   3'- guaUAUUCGCgCGCUguagCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 32387 0.7 0.788476
Target:  5'- -----cGGCGCGCGcacGCGgcaCGaCGCCCCg -3'
miRNA:   3'- guauauUCGCGCGC---UGUa--GC-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.