miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 130848 0.66 0.952187
Target:  5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3'
miRNA:   3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5'
6666 5' -53.1 NC_001847.1 + 37197 0.66 0.96366
Target:  5'- gCCCGGUGcGAGGCGcccGGUGccgcuuggcggcGGCGCGg- -3'
miRNA:   3'- -GGGCCGU-UUCCGUu--CCAU------------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 134769 0.66 0.947877
Target:  5'- gUCCGGCGcgcggcgcgcGGGGCGGGccccgGGGCGCGa- -3'
miRNA:   3'- -GGGCCGU----------UUCCGUUCca---UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 36258 0.66 0.960074
Target:  5'- uCCCGGCcuGGGCcgcccAGGCGCAc- -3'
miRNA:   3'- -GGGCCGuuUCCGuuccaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 84537 0.66 0.956251
Target:  5'- gUUGGCGggcGGGGCGGGGcguGCGCcUCg -3'
miRNA:   3'- gGGCCGU---UUCCGUUCCauuCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 39755 0.66 0.96366
Target:  5'- cCCCGGCGccGGCcucaGAGccGgcGGCGCGg- -3'
miRNA:   3'- -GGGCCGUuuCCG----UUC--CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 25274 0.66 0.947877
Target:  5'- gCCCGGUAAGGggguuagcaGCGGGGUGggaAGCuGCGg- -3'
miRNA:   3'- -GGGCCGUUUC---------CGUUCCAU---UCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 105855 0.66 0.955856
Target:  5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 74378 0.66 0.952187
Target:  5'- gCgCGGUAGAGGCGcuGGGggaccGCGCGg- -3'
miRNA:   3'- -GgGCCGUUUCCGU--UCCauu--CGCGUag -5'
6666 5' -53.1 NC_001847.1 + 96829 0.66 0.947877
Target:  5'- -gCGGUAAuuGGgGGGGaaaGGGCGCGUCg -3'
miRNA:   3'- ggGCCGUUu-CCgUUCCa--UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 56894 0.66 0.952187
Target:  5'- gCCGGCGAcGGCGAcgccGGcGGGCGgGUg -3'
miRNA:   3'- gGGCCGUUuCCGUU----CCaUUCGCgUAg -5'
6666 5' -53.1 NC_001847.1 + 34675 0.66 0.960074
Target:  5'- gCCGcGCAgcGGCAGGagGAGCGCuggCg -3'
miRNA:   3'- gGGC-CGUuuCCGUUCcaUUCGCGua-G- -5'
6666 5' -53.1 NC_001847.1 + 55375 0.66 0.96366
Target:  5'- gCCGGagacgGucGGCGAGGacAGCGuCGUCa -3'
miRNA:   3'- gGGCCg----UuuCCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 52797 0.66 0.96366
Target:  5'- -gCGGCGAcauGGGCGGGGcuaUAGGuCGCucGUCg -3'
miRNA:   3'- ggGCCGUU---UCCGUUCC---AUUC-GCG--UAG- -5'
6666 5' -53.1 NC_001847.1 + 32651 0.66 0.952187
Target:  5'- gCUGGa--GGGCGAGGUGgacGGCGCc-- -3'
miRNA:   3'- gGGCCguuUCCGUUCCAU---UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 128087 0.66 0.947877
Target:  5'- gCCCGGUAAGGggguuagcaGCGGGGUGggaAGCuGCGg- -3'
miRNA:   3'- -GGGCCGUUUC---------CGUUCCAU---UCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 36952 0.66 0.960074
Target:  5'- gCCGaGCGGGGGCugcGGccAGCGCGg- -3'
miRNA:   3'- gGGC-CGUUUCCGuu-CCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 1476 0.66 0.947877
Target:  5'- gCCgCGGCAGAGccGCAGcGgcGGCGCcUCg -3'
miRNA:   3'- -GG-GCCGUUUC--CGUUcCauUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 51253 0.66 0.96366
Target:  5'- gCCaCGGCAucuucugcGGGCAGccGGUGgacgGGCGCAa- -3'
miRNA:   3'- -GG-GCCGUu-------UCCGUU--CCAU----UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 95300 0.66 0.952187
Target:  5'- aCCGGCGGcuGGCGcgcgccacgcAGG-AAGCGC-UCg -3'
miRNA:   3'- gGGCCGUUu-CCGU----------UCCaUUCGCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.