miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 126186 0.67 0.916704
Target:  5'- gCCCgagaugagGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- -GGG--------CCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 42050 0.67 0.921966
Target:  5'- aCUGGCucgugugccuGGGGCu-GGUGccgcugcGGCGCAUCg -3'
miRNA:   3'- gGGCCGu---------UUCCGuuCCAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 59403 0.67 0.916704
Target:  5'- gCCGGCGGAGGCGcGGc-GGU-CAUCg -3'
miRNA:   3'- gGGCCGUUUCCGUuCCauUCGcGUAG- -5'
6666 5' -53.1 NC_001847.1 + 60225 0.67 0.916704
Target:  5'- gCCCGGCGucgucgucGGCGAGGgcuagcacGGCGCcgacuUCg -3'
miRNA:   3'- -GGGCCGUuu------CCGUUCCau------UCGCGu----AG- -5'
6666 5' -53.1 NC_001847.1 + 105225 0.67 0.916704
Target:  5'- aCCCGcgggcGCGcGGGCAcAGGcGGGCGCAcuUCg -3'
miRNA:   3'- -GGGC-----CGUuUCCGU-UCCaUUCGCGU--AG- -5'
6666 5' -53.1 NC_001847.1 + 23373 0.67 0.916704
Target:  5'- gCCCgagaugagGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- -GGG--------CCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 60370 0.67 0.928117
Target:  5'- gCCGuaGAGGGCAAGGUAccCGCc-- -3'
miRNA:   3'- gGGCcgUUUCCGUUCCAUucGCGuag -5'
6666 5' -53.1 NC_001847.1 + 33503 0.67 0.943317
Target:  5'- -gCGGCGcGGGCGGcGGcGGGCGCcgCc -3'
miRNA:   3'- ggGCCGUuUCCGUU-CCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 35894 0.67 0.943317
Target:  5'- gUCGGCGgcGGCGgcguGGGacGGCGCGUg -3'
miRNA:   3'- gGGCCGUuuCCGU----UCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 57156 0.67 0.943317
Target:  5'- gCCaCGaGCu-GGGCGAGG--GGCGCGUg -3'
miRNA:   3'- -GG-GC-CGuuUCCGUUCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 85131 0.67 0.943317
Target:  5'- gCCCGGggccCAGcAGGC--GGUGGGCGCGc- -3'
miRNA:   3'- -GGGCC----GUU-UCCGuuCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108041 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 43095 0.67 0.943317
Target:  5'- -gCGGCGGAGGCGcccGG-AGGCGCc-- -3'
miRNA:   3'- ggGCCGUUUCCGUu--CCaUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 30223 0.67 0.943317
Target:  5'- gCCGcGCGcgcccGGGcCGAGGUGcGCGUGUCg -3'
miRNA:   3'- gGGC-CGUu----UCC-GUUCCAUuCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 30418 0.67 0.933439
Target:  5'- gCCGGCAAgcucguggcGGGCGcGG-AGGCGCc-- -3'
miRNA:   3'- gGGCCGUU---------UCCGUuCCaUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 13113 0.67 0.933439
Target:  5'- uCgCGGCcGGGGCGcgcGGgcGGCGCcgCg -3'
miRNA:   3'- -GgGCCGuUUCCGUu--CCauUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 102794 0.67 0.922538
Target:  5'- cCCCGcGCGGGGGCuGGGcccccuccGCGCcgCg -3'
miRNA:   3'- -GGGC-CGUUUCCGuUCCauu-----CGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 107811 0.67 0.933439
Target:  5'- gCCgCGGCAAAGcGCGgcGGcGgcGGCGCGg- -3'
miRNA:   3'- -GG-GCCGUUUC-CGU--UC-CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 14684 0.67 0.928117
Target:  5'- gCCGGCGGcgcGGCGAuGGagcAGGCGCAg- -3'
miRNA:   3'- gGGCCGUUu--CCGUU-CCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 80418 0.67 0.928117
Target:  5'- -aCGGCAAAGuCGAGGaagggGAcccGCGCGUCg -3'
miRNA:   3'- ggGCCGUUUCcGUUCCa----UU---CGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.