miRNA display CGI


Results 81 - 100 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 1853 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 5228 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 27377 0.67 0.938505
Target:  5'- cCCCGGCGcgcgcgauagcGAGGUugcucGGGggGGCGCu-- -3'
miRNA:   3'- -GGGCCGU-----------UUCCGu----UCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 17083 0.67 0.938505
Target:  5'- gUCCGGCAaucugcGAGGuCGGGGUcGGgGuCGUCc -3'
miRNA:   3'- -GGGCCGU------UUCC-GUUCCAuUCgC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 9000 0.67 0.938505
Target:  5'- --gGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- gggCCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 5704 0.67 0.933957
Target:  5'- aCCCGGCAGuucAGGUgcgccuggGAGGgcuuaccugcccgcgGGGCGguUCg -3'
miRNA:   3'- -GGGCCGUU---UCCG--------UUCCa--------------UUCGCguAG- -5'
6666 5' -53.1 NC_001847.1 + 95877 0.67 0.933439
Target:  5'- -aCGGCAcgaaagaagGGGGCGAGccAAGCGCAc- -3'
miRNA:   3'- ggGCCGU---------UUCCGUUCcaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 30357 0.67 0.933439
Target:  5'- gCCCGG-GGAGGCGcuGgcGGCGCcgCc -3'
miRNA:   3'- -GGGCCgUUUCCGUucCauUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 85998 0.67 0.933439
Target:  5'- gCgCGGCAacaacucaaaaAAGGCGGGGcgcggcggGAGCGCGa- -3'
miRNA:   3'- -GgGCCGU-----------UUCCGUUCCa-------UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 114043 0.67 0.933439
Target:  5'- gCCCGGC---GGCGuGGUGAugGCGUCg -3'
miRNA:   3'- -GGGCCGuuuCCGUuCCAUUcgCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 109849 0.67 0.933439
Target:  5'- gUCGGCGAGGGCGccacguGGU--GCGCGg- -3'
miRNA:   3'- gGGCCGUUUCCGUu-----CCAuuCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108517 0.67 0.933957
Target:  5'- aCCCGGCAGuucAGGUgcgccuggGAGGgcuuaccugcccgcgGGGCGguUCg -3'
miRNA:   3'- -GGGCCGUU---UCCG--------UUCCa--------------UUCGCguAG- -5'
6666 5' -53.1 NC_001847.1 + 73675 0.67 0.942847
Target:  5'- cCCUGGCccgcgccaucgauGAAGGCGcGGcccGGCGCGUg -3'
miRNA:   3'- -GGGCCG-------------UUUCCGUuCCau-UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 111813 0.67 0.938505
Target:  5'- --gGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- gggCCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 104666 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 130190 0.67 0.938505
Target:  5'- cCCCGGCGcgcgcgauagcGAGGUugcucGGGggGGCGCu-- -3'
miRNA:   3'- -GGGCCGU-----------UUCCGu----UCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 25258 0.67 0.938505
Target:  5'- gCCGGUAcAGcGCGgucAGGUAGGCGUu-- -3'
miRNA:   3'- gGGCCGUuUC-CGU---UCCAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 123800 0.67 0.943317
Target:  5'- gCgCGGCGgcGGCAGcGGcAGGCGcCGUCc -3'
miRNA:   3'- -GgGCCGUuuCCGUU-CCaUUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 108041 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 30223 0.67 0.943317
Target:  5'- gCCGcGCGcgcccGGGcCGAGGUGcGCGUGUCg -3'
miRNA:   3'- gGGC-CGUu----UCC-GUUCCAUuCGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.