miRNA display CGI


Results 41 - 60 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 98550 0.72 0.729533
Target:  5'- aCCCGGUAGcagagcGGCGugccgucggcguccAGGUAGGCGCGc- -3'
miRNA:   3'- -GGGCCGUUu-----CCGU--------------UCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 3972 0.72 0.722382
Target:  5'- -gCGGCGAGGGCGccgGGGgccGGGCGCGc- -3'
miRNA:   3'- ggGCCGUUUCCGU---UCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 110682 0.72 0.712096
Target:  5'- gCCGcgcugcgugcGCGAGGGUGAGGgcGGCGCGcUCg -3'
miRNA:   3'- gGGC----------CGUUUCCGUUCCauUCGCGU-AG- -5'
6666 5' -53.1 NC_001847.1 + 29095 0.72 0.701738
Target:  5'- gCCGGCGAGcacGGCGcGGgcGGCGCGc- -3'
miRNA:   3'- gGGCCGUUU---CCGUuCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 35837 0.72 0.732584
Target:  5'- cCCCGGCGGGcGGCGAuGGgc-GUGCAUa -3'
miRNA:   3'- -GGGCCGUUU-CCGUU-CCauuCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 25440 0.72 0.701738
Target:  5'- aCCgGGCAGGGGCGAGccaaaugcaaAAGCGCAa- -3'
miRNA:   3'- -GGgCCGUUUCCGUUCca--------UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 81069 0.71 0.781993
Target:  5'- gCCGGCGAAGGCGGcGacGGCGCuggCg -3'
miRNA:   3'- gGGCCGUUUCCGUUcCauUCGCGua-G- -5'
6666 5' -53.1 NC_001847.1 + 55498 0.71 0.781993
Target:  5'- cUCCGGCAGuGGUucGGcggcGAGCGCGUa -3'
miRNA:   3'- -GGGCCGUUuCCGuuCCa---UUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 3939 0.71 0.781993
Target:  5'- gCUGGCGccgcGGCGGGGggGGCGcCGUCu -3'
miRNA:   3'- gGGCCGUuu--CCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 88264 0.71 0.772359
Target:  5'- gCCgGGCGGGGaCGGGGgGAGCGCuUCg -3'
miRNA:   3'- -GGgCCGUUUCcGUUCCaUUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 82477 0.71 0.7527
Target:  5'- cCCCGGCcacGGGGCcgccgaAGGcGUAGGuCGCGUCu -3'
miRNA:   3'- -GGGCCGu--UUCCG------UUC-CAUUC-GCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 32191 0.71 0.756671
Target:  5'- cCCCGGCcGgggcccgaggcccgcGGGCGGGGccgGGGCGCGg- -3'
miRNA:   3'- -GGGCCGuU---------------UCCGUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 84539 0.71 0.781993
Target:  5'- gCCCGGCGAAGGCGcc-----CGCGUCg -3'
miRNA:   3'- -GGGCCGUUUCCGUuccauucGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 106752 0.71 0.781993
Target:  5'- gCUGGCGccgcGGCGGGGggGGCGcCGUCu -3'
miRNA:   3'- gGGCCGUuu--CCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 135004 0.71 0.756671
Target:  5'- cCCCGGCcGgggcccgaggcccgcGGGCGGGGccgGGGCGCGg- -3'
miRNA:   3'- -GGGCCGuU---------------UCCGUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 27908 0.71 0.742694
Target:  5'- gCCCGGCcgcgcuugcGGAGGCcAGGgcGGC-CGUCu -3'
miRNA:   3'- -GGGCCG---------UUUCCGuUCCauUCGcGUAG- -5'
6666 5' -53.1 NC_001847.1 + 54389 0.71 0.7527
Target:  5'- gCgGGCGGccgcGGGCGAGGcGGGCGCcgCc -3'
miRNA:   3'- gGgCCGUU----UCCGUUCCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 81823 0.71 0.742694
Target:  5'- -gCGGCGugguccAGGCGAGGUccAGCGCGUa -3'
miRNA:   3'- ggGCCGUu-----UCCGUUCCAu-UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 42310 0.71 0.7527
Target:  5'- aCCGGCGAagaGGGCGAGuguuucgugcuGUGGGCGCc-- -3'
miRNA:   3'- gGGCCGUU---UCCGUUC-----------CAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 60018 0.71 0.746709
Target:  5'- cCCCGGCGGggcccgggccuucucGGGCAAGcGccgGGGCGCcgCc -3'
miRNA:   3'- -GGGCCGUU---------------UCCGUUC-Ca--UUCGCGuaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.