miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 25195 0.7 0.791483
Target:  5'- gCCCgaaggggagggGGCAAGaccGGCAAGGUGGGCuGCGg- -3'
miRNA:   3'- -GGG-----------CCGUUU---CCGUUCCAUUCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 54539 0.7 0.791483
Target:  5'- gUCCGggggcGCAGAcGGCGGGGgcGGCGCGg- -3'
miRNA:   3'- -GGGC-----CGUUU-CCGUUCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 80023 0.7 0.791483
Target:  5'- gUuuGGCGcGGGgGGGGUcGGCGuCAUCg -3'
miRNA:   3'- -GggCCGUuUCCgUUCCAuUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 128008 0.7 0.791483
Target:  5'- gCCCgaaggggagggGGCAAGaccGGCAAGGUGGGCuGCGg- -3'
miRNA:   3'- -GGG-----------CCGUUU---CCGUUCCAUUCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 54093 0.7 0.791483
Target:  5'- gCCGGCAaccuaGAGGCGcucgccgcgcGGG-AGGCGCAg- -3'
miRNA:   3'- gGGCCGU-----UUCCGU----------UCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 77612 0.7 0.799892
Target:  5'- uUCUGGCGGcgccgcuGGGCGAGGacGGCGCGc- -3'
miRNA:   3'- -GGGCCGUU-------UCCGUUCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 94131 0.7 0.800819
Target:  5'- gCCCGuuGCAGGacGGCAcgacgccggagcAGGUGAGCGCGg- -3'
miRNA:   3'- -GGGC--CGUUU--CCGU------------UCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 24546 0.7 0.800819
Target:  5'- uUCCGuGCAGAGGUugGAGcccGUuAGCGCGUCc -3'
miRNA:   3'- -GGGC-CGUUUCCG--UUC---CAuUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 93221 0.7 0.800819
Target:  5'- -aCGGCGAGGGCGAGGgcGAGgGUucuUCc -3'
miRNA:   3'- ggGCCGUUUCCGUUCCa-UUCgCGu--AG- -5'
6666 5' -53.1 NC_001847.1 + 71488 0.7 0.800819
Target:  5'- gCCCGGCAAcgguGGCGGcGGUGcgcGGUGCcuuUCg -3'
miRNA:   3'- -GGGCCGUUu---CCGUU-CCAU---UCGCGu--AG- -5'
6666 5' -53.1 NC_001847.1 + 67315 0.7 0.800819
Target:  5'- gCCGGCAGccccgccGGCGuauAGGUGcAGCaGCAUCg -3'
miRNA:   3'- gGGCCGUUu------CCGU---UCCAU-UCG-CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 35487 0.7 0.804508
Target:  5'- -gCGGCAAAGGCGgcgcgcgcggAGGccacggcgcgcgccGAGCGCAUCc -3'
miRNA:   3'- ggGCCGUUUCCGU----------UCCa-------------UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 19742 0.7 0.806342
Target:  5'- aCgCGGCGggccgcuuagcgggAAGGCGGGGUGcgggcucGGCGCAgUCa -3'
miRNA:   3'- -GgGCCGU--------------UUCCGUUCCAU-------UCGCGU-AG- -5'
6666 5' -53.1 NC_001847.1 + 95061 0.7 0.809991
Target:  5'- aCCGGCGc-GGCAAGG--GGUGCAa- -3'
miRNA:   3'- gGGCCGUuuCCGUUCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 48202 0.7 0.809991
Target:  5'- gCCGGCGgccAGGGcCGAGG--AGCGCAg- -3'
miRNA:   3'- gGGCCGU---UUCC-GUUCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 101467 0.7 0.809991
Target:  5'- gCCGcGCGGccGCAAGGgcGGCGCGc- -3'
miRNA:   3'- gGGC-CGUUucCGUUCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 21698 0.7 0.81899
Target:  5'- gCCCGGCGAGGaGCcgGAGGaccAGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CG--UUCCau-UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 77404 0.7 0.81899
Target:  5'- gCCCGGCGGcacuacgagacGGGCGAGGgcuuCGuCGUCg -3'
miRNA:   3'- -GGGCCGUU-----------UCCGUUCCauucGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 124511 0.7 0.81899
Target:  5'- gCCCGGCGAGGaGCcgGAGGaccAGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CG--UUCCau-UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 106780 0.7 0.827808
Target:  5'- cUCCGGCGcgAGGGCGccgGGGgcccGGGCGCGc- -3'
miRNA:   3'- -GGGCCGU--UUCCGU---UCCa---UUCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.