miRNA display CGI


Results 81 - 100 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 61372 0.7 0.827808
Target:  5'- aCCGGC-GAGGCGucgcggaucAGGUAcuGCGCAa- -3'
miRNA:   3'- gGGCCGuUUCCGU---------UCCAUu-CGCGUag -5'
6666 5' -53.1 NC_001847.1 + 25357 0.7 0.827808
Target:  5'- gCCGGCAAGcugauGGCAGGGggcGGCgGCAg- -3'
miRNA:   3'- gGGCCGUUU-----CCGUUCCau-UCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 106780 0.7 0.827808
Target:  5'- cUCCGGCGcgAGGGCGccgGGGgcccGGGCGCGc- -3'
miRNA:   3'- -GGGCCGU--UUCCGU---UCCa---UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 106067 0.7 0.827808
Target:  5'- gCCGGC---GGCAGGGgcgccGGCGCcgCg -3'
miRNA:   3'- gGGCCGuuuCCGUUCCau---UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 3254 0.7 0.827808
Target:  5'- gCCGGC---GGCAGGGgcgccGGCGCcgCg -3'
miRNA:   3'- gGGCCGuuuCCGUUCCau---UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 50436 0.7 0.833867
Target:  5'- aCCGGCGcaAAGGCAGcGccuucuacggccacGUGAGCGCcgCg -3'
miRNA:   3'- gGGCCGU--UUCCGUU-C--------------CAUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 134507 0.7 0.836435
Target:  5'- gUCgGGCcucGGGGGCGGGGggAGGCGCGg- -3'
miRNA:   3'- -GGgCCG---UUUCCGUUCCa-UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 41127 0.7 0.836435
Target:  5'- uCCCGGC--AGGCGcGGacauGGCGuCGUCg -3'
miRNA:   3'- -GGGCCGuuUCCGUuCCau--UCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 76412 0.7 0.836435
Target:  5'- gCCgCGGCGGGGGCAccccgcGGcggGAGCGCGc- -3'
miRNA:   3'- -GG-GCCGUUUCCGUu-----CCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 73535 0.7 0.836435
Target:  5'- gCCGGCuGAuuGCgGAGGUGGGCGCGg- -3'
miRNA:   3'- gGGCCG-UUucCG-UUCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 31694 0.7 0.836435
Target:  5'- gUCgGGCcucGGGGGCGGGGggAGGCGCGg- -3'
miRNA:   3'- -GGgCCG---UUUCCGUUCCa-UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 56617 0.7 0.836435
Target:  5'- --aGGCcGAGGCcgcGGUcGAGCGCGUCu -3'
miRNA:   3'- gggCCGuUUCCGuu-CCA-UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 59342 0.7 0.836435
Target:  5'- aUUGGCGgcGGCGAGGUcgcGCGCcgCg -3'
miRNA:   3'- gGGCCGUuuCCGUUCCAuu-CGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 99775 0.7 0.836435
Target:  5'- gCCgCGGCuuuGGGCGGGGggcAGCGCc-- -3'
miRNA:   3'- -GG-GCCGuu-UCCGUUCCau-UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 69428 0.7 0.836435
Target:  5'- cCCCGGC--GGGCucuGGGaUGAaCGCGUCc -3'
miRNA:   3'- -GGGCCGuuUCCGu--UCC-AUUcGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 85052 0.7 0.83983
Target:  5'- gCCCGGCGc-GGCAgccuuggccgcgcccGGGUccGCGCcgCg -3'
miRNA:   3'- -GGGCCGUuuCCGU---------------UCCAuuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 108097 0.69 0.844862
Target:  5'- aCCCGGggaCGGGGGUAcGGcGAGCGCGa- -3'
miRNA:   3'- -GGGCC---GUUUCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 49720 0.69 0.844862
Target:  5'- gCCCGuGCAAGugggcgccGGCGAGGcgguGCGCGUg -3'
miRNA:   3'- -GGGC-CGUUU--------CCGUUCCauu-CGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 124950 0.69 0.844862
Target:  5'- gCCCGGCGgcGGCGGcGGc--GCGCAa- -3'
miRNA:   3'- -GGGCCGUuuCCGUU-CCauuCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 132377 0.69 0.844862
Target:  5'- gCCGGCGGGGGCGccGGcgccGGCGCcgCc -3'
miRNA:   3'- gGGCCGUUUCCGUu-CCau--UCGCGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.