miRNA display CGI


Results 61 - 80 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 85131 0.67 0.943317
Target:  5'- gCCCGGggccCAGcAGGC--GGUGGGCGCGc- -3'
miRNA:   3'- -GGGCC----GUU-UCCGuuCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 30223 0.67 0.943317
Target:  5'- gCCGcGCGcgcccGGGcCGAGGUGcGCGUGUCg -3'
miRNA:   3'- gGGC-CGUu----UCC-GUUCCAUuCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 5228 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 33503 0.67 0.943317
Target:  5'- -gCGGCGcGGGCGGcGGcGGGCGCcgCc -3'
miRNA:   3'- ggGCCGUuUCCGUU-CCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 108041 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 43095 0.67 0.943317
Target:  5'- -gCGGCGGAGGCGcccGG-AGGCGCc-- -3'
miRNA:   3'- ggGCCGUUUCCGUu--CCaUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 123800 0.67 0.943317
Target:  5'- gCgCGGCGgcGGCAGcGGcAGGCGcCGUCc -3'
miRNA:   3'- -GgGCCGUuuCCGUU-CCaUUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 57156 0.67 0.943317
Target:  5'- gCCaCGaGCu-GGGCGAGG--GGCGCGUg -3'
miRNA:   3'- -GG-GC-CGuuUCCGUUCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 35894 0.67 0.943317
Target:  5'- gUCGGCGgcGGCGgcguGGGacGGCGCGUg -3'
miRNA:   3'- gGGCCGUuuCCGU----UCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 73675 0.67 0.942847
Target:  5'- cCCUGGCccgcgccaucgauGAAGGCGcGGcccGGCGCGUg -3'
miRNA:   3'- -GGGCCG-------------UUUCCGUuCCau-UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 27377 0.67 0.938505
Target:  5'- cCCCGGCGcgcgcgauagcGAGGUugcucGGGggGGCGCu-- -3'
miRNA:   3'- -GGGCCGU-----------UUCCGu----UCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 1853 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 9000 0.67 0.938505
Target:  5'- --gGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- gggCCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 130190 0.67 0.938505
Target:  5'- cCCCGGCGcgcgcgauagcGAGGUugcucGGGggGGCGCu-- -3'
miRNA:   3'- -GGGCCGU-----------UUCCGu----UCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 104666 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 111813 0.67 0.938505
Target:  5'- --gGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- gggCCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 25258 0.67 0.938505
Target:  5'- gCCGGUAcAGcGCGgucAGGUAGGCGUu-- -3'
miRNA:   3'- gGGCCGUuUC-CGU---UCCAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 18081 0.67 0.938505
Target:  5'- --gGGCGGAGGCGAGGgcgAGGCuuccGCcUCc -3'
miRNA:   3'- gggCCGUUUCCGUUCCa--UUCG----CGuAG- -5'
6666 5' -53.1 NC_001847.1 + 19800 0.67 0.938505
Target:  5'- gUCGGCGGAGGCGGuggcGGUGgcGGgGCGg- -3'
miRNA:   3'- gGGCCGUUUCCGUU----CCAU--UCgCGUag -5'
6666 5' -53.1 NC_001847.1 + 17083 0.67 0.938505
Target:  5'- gUCCGGCAaucugcGAGGuCGGGGUcGGgGuCGUCc -3'
miRNA:   3'- -GGGCCGU------UUCC-GUUCCAuUCgC-GUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.