miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 27142 0.68 0.908108
Target:  5'- gCCGGCGAGGGCuucucccGCGCcgCg -3'
miRNA:   3'- gGGCCGUUUCCGuuccauuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 27377 0.67 0.938505
Target:  5'- cCCCGGCGcgcgcgauagcGAGGUugcucGGGggGGCGCu-- -3'
miRNA:   3'- -GGGCCGU-----------UUCCGu----UCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 27702 0.72 0.712096
Target:  5'- gCCGGCGcacgcGGCGGGGgcAAGgGCGUCa -3'
miRNA:   3'- gGGCCGUuu---CCGUUCCa-UUCgCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 27908 0.71 0.742694
Target:  5'- gCCCGGCcgcgcuugcGGAGGCcAGGgcGGC-CGUCu -3'
miRNA:   3'- -GGGCCG---------UUUCCGuUCCauUCGcGUAG- -5'
6666 5' -53.1 NC_001847.1 + 28035 0.66 0.952187
Target:  5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3'
miRNA:   3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5'
6666 5' -53.1 NC_001847.1 + 29047 0.68 0.910615
Target:  5'- gCCGGCAGacgugcugcAGGC--GGUGGGCuGCGUg -3'
miRNA:   3'- gGGCCGUU---------UCCGuuCCAUUCG-CGUAg -5'
6666 5' -53.1 NC_001847.1 + 29095 0.72 0.701738
Target:  5'- gCCGGCGAGcacGGCGcGGgcGGCGCGc- -3'
miRNA:   3'- gGGCCGUUU---CCGUuCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 29564 0.69 0.844862
Target:  5'- gCCGGCGGGGGCGccGGcgccGGCGCcgCc -3'
miRNA:   3'- gGGCCGUUUCCGUu-CCau--UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 29788 0.69 0.876431
Target:  5'- cCCCGGCcc-GGCGGcGG-GAGCGCcgCc -3'
miRNA:   3'- -GGGCCGuuuCCGUU-CCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 30223 0.67 0.943317
Target:  5'- gCCGcGCGcgcccGGGcCGAGGUGcGCGUGUCg -3'
miRNA:   3'- gGGC-CGUu----UCC-GUUCCAUuCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 30357 0.67 0.933439
Target:  5'- gCCCGG-GGAGGCGcuGgcGGCGCcgCc -3'
miRNA:   3'- -GGGCCgUUUCCGUucCauUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 30418 0.67 0.933439
Target:  5'- gCCGGCAAgcucguggcGGGCGcGG-AGGCGCc-- -3'
miRNA:   3'- gGGCCGUU---------UCCGUuCCaUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 31320 0.68 0.890838
Target:  5'- gCgGGCGgcGGCcuGGUgGAGCGCGUg -3'
miRNA:   3'- gGgCCGUuuCCGuuCCA-UUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 31417 0.68 0.910615
Target:  5'- uCCCGGCGccGGCGGGcGgcGGCcgGCGg- -3'
miRNA:   3'- -GGGCCGUuuCCGUUC-CauUCG--CGUag -5'
6666 5' -53.1 NC_001847.1 + 31603 0.69 0.876431
Target:  5'- gCCCGcGgGAAGGgAGGGaggGGGCGCGa- -3'
miRNA:   3'- -GGGC-CgUUUCCgUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 31694 0.7 0.836435
Target:  5'- gUCgGGCcucGGGGGCGGGGggAGGCGCGg- -3'
miRNA:   3'- -GGgCCG---UUUCCGUUCCa-UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 31956 0.66 0.947877
Target:  5'- gUCCGGCGcgcggcgcgcGGGGCGGGccccgGGGCGCGa- -3'
miRNA:   3'- -GGGCCGU----------UUCCGUUCca---UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 31996 0.66 0.956251
Target:  5'- gCCCGGgAGGGacGCGGGcGUgGAGCGCGa- -3'
miRNA:   3'- -GGGCCgUUUC--CGUUC-CA-UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 32028 0.73 0.680842
Target:  5'- cUCCGGCGGGGcGCGGGGacGGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CGUUCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 32127 0.69 0.868874
Target:  5'- cCCCGGgcgcCGGGGGCGGGGgcggGGGCGgGg- -3'
miRNA:   3'- -GGGCC----GUUUCCGUUCCa---UUCGCgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.