miRNA display CGI


Results 81 - 100 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 32191 0.71 0.756671
Target:  5'- cCCCGGCcGgggcccgaggcccgcGGGCGGGGccgGGGCGCGg- -3'
miRNA:   3'- -GGGCCGuU---------------UCCGUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 32651 0.66 0.952187
Target:  5'- gCUGGa--GGGCGAGGUGgacGGCGCc-- -3'
miRNA:   3'- gGGCCguuUCCGUUCCAU---UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 32878 0.74 0.59629
Target:  5'- uCCUGGCGcuggAGGGCAcGGUGcGCGCcgCg -3'
miRNA:   3'- -GGGCCGU----UUCCGUuCCAUuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 32938 0.68 0.910615
Target:  5'- gCCGGCGgcGGGGCcGGGggGGCGgAg- -3'
miRNA:   3'- gGGCCGU--UUCCGuUCCauUCGCgUag -5'
6666 5' -53.1 NC_001847.1 + 33503 0.67 0.943317
Target:  5'- -gCGGCGcGGGCGGcGGcGGGCGCcgCc -3'
miRNA:   3'- ggGCCGUuUCCGUU-CCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 34675 0.66 0.960074
Target:  5'- gCCGcGCAgcGGCAGGagGAGCGCuggCg -3'
miRNA:   3'- gGGC-CGUuuCCGUUCcaUUCGCGua-G- -5'
6666 5' -53.1 NC_001847.1 + 35487 0.7 0.804508
Target:  5'- -gCGGCAAAGGCGgcgcgcgcggAGGccacggcgcgcgccGAGCGCAUCc -3'
miRNA:   3'- ggGCCGUUUCCGU----------UCCa-------------UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 35591 0.68 0.909992
Target:  5'- gCCGGCGcAAGGCugcGGUAcaucgcaaacgaaAGCGCGc- -3'
miRNA:   3'- gGGCCGU-UUCCGuu-CCAU-------------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 35837 0.72 0.732584
Target:  5'- cCCCGGCGGGcGGCGAuGGgc-GUGCAUa -3'
miRNA:   3'- -GGGCCGUUU-CCGUU-CCauuCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 35894 0.67 0.943317
Target:  5'- gUCGGCGgcGGCGgcguGGGacGGCGCGUg -3'
miRNA:   3'- gGGCCGUuuCCGU----UCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 36258 0.66 0.960074
Target:  5'- uCCCGGCcuGGGCcgcccAGGCGCAc- -3'
miRNA:   3'- -GGGCCGuuUCCGuuccaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 36952 0.66 0.960074
Target:  5'- gCCGaGCGGGGGCugcGGccAGCGCGg- -3'
miRNA:   3'- gGGC-CGUUUCCGuu-CCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 37197 0.66 0.96366
Target:  5'- gCCCGGUGcGAGGCGcccGGUGccgcuuggcggcGGCGCGg- -3'
miRNA:   3'- -GGGCCGU-UUCCGUu--CCAU------------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 39404 0.69 0.85871
Target:  5'- gCCGGCcGGGcuccuccgaaagcaGCGAGGggGGCGCGUg -3'
miRNA:   3'- gGGCCGuUUC--------------CGUUCCauUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 39755 0.66 0.96366
Target:  5'- cCCCGGCGccGGCcucaGAGccGgcGGCGCGg- -3'
miRNA:   3'- -GGGCCGUuuCCG----UUC--CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 41127 0.7 0.836435
Target:  5'- uCCCGGC--AGGCGcGGacauGGCGuCGUCg -3'
miRNA:   3'- -GGGCCGuuUCCGUuCCau--UCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 41546 0.73 0.649201
Target:  5'- aCCUgGGCGAuGGCAGaGUgcGAGCGCGUCg -3'
miRNA:   3'- -GGG-CCGUUuCCGUUcCA--UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 42050 0.67 0.921966
Target:  5'- aCUGGCucgugugccuGGGGCu-GGUGccgcugcGGCGCAUCg -3'
miRNA:   3'- gGGCCGu---------UUCCGuuCCAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 42310 0.71 0.7527
Target:  5'- aCCGGCGAagaGGGCGAGuguuucgugcuGUGGGCGCc-- -3'
miRNA:   3'- gGGCCGUU---UCCGUUC-----------CAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 42543 0.76 0.48355
Target:  5'- gCUCGGUGAGGGCGAGGacgcGGcCGCGUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCau--UC-GCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.