miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 109849 0.67 0.933439
Target:  5'- gUCGGCGAGGGCGccacguGGU--GCGCGg- -3'
miRNA:   3'- gGGCCGUUUCCGUu-----CCAuuCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 109451 0.66 0.95092
Target:  5'- -gCGGCuuacgucGGCGAGGUcguggaucgcaugaGAGCGCAgUCg -3'
miRNA:   3'- ggGCCGuuu----CCGUUCCA--------------UUCGCGU-AG- -5'
6666 5' -53.1 NC_001847.1 + 109265 0.66 0.960074
Target:  5'- gUCGGCAGGGGCGggcugcaagcgAGGggGGCGag-Ca -3'
miRNA:   3'- gGGCCGUUUCCGU-----------UCCauUCGCguaG- -5'
6666 5' -53.1 NC_001847.1 + 108960 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108866 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108517 0.67 0.933957
Target:  5'- aCCCGGCAGuucAGGUgcgccuggGAGGgcuuaccugcccgcgGGGCGguUCg -3'
miRNA:   3'- -GGGCCGUU---UCCG--------UUCCa--------------UUCGCguAG- -5'
6666 5' -53.1 NC_001847.1 + 108097 0.69 0.844862
Target:  5'- aCCCGGggaCGGGGGUAcGGcGAGCGCGa- -3'
miRNA:   3'- -GGGCC---GUUUCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108041 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 107811 0.67 0.933439
Target:  5'- gCCgCGGCAAAGcGCGgcGGcGgcGGCGCGg- -3'
miRNA:   3'- -GG-GCCGUUUC-CGU--UC-CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 107693 0.66 0.956251
Target:  5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3'
miRNA:   3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 106780 0.7 0.827808
Target:  5'- cUCCGGCGcgAGGGCGccgGGGgcccGGGCGCGc- -3'
miRNA:   3'- -GGGCCGU--UUCCGU---UCCa---UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 106752 0.71 0.781993
Target:  5'- gCUGGCGccgcGGCGGGGggGGCGcCGUCu -3'
miRNA:   3'- gGGCCGUuu--CCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 106147 0.69 0.868874
Target:  5'- gCCGGCGccGGCcuccGGGUAGGC-CAUg -3'
miRNA:   3'- gGGCCGUuuCCGu---UCCAUUCGcGUAg -5'
6666 5' -53.1 NC_001847.1 + 106067 0.7 0.827808
Target:  5'- gCCGGC---GGCAGGGgcgccGGCGCcgCg -3'
miRNA:   3'- gGGCCGuuuCCGUUCCau---UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 105855 0.66 0.955856
Target:  5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 105225 0.67 0.916704
Target:  5'- aCCCGcgggcGCGcGGGCAcAGGcGGGCGCAcuUCg -3'
miRNA:   3'- -GGGC-----CGUuUCCGU-UCCaUUCGCGU--AG- -5'
6666 5' -53.1 NC_001847.1 + 104666 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 104289 0.66 0.947877
Target:  5'- gCCgCGGCAGAGccGCAGcGgcGGCGCcUCg -3'
miRNA:   3'- -GG-GCCGUUUC--CGUUcCauUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 104228 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 102965 0.69 0.844862
Target:  5'- cCCCGGCcgGGGGGcCGGGGUuc-UGCGUCu -3'
miRNA:   3'- -GGGCCG--UUUCC-GUUCCAuucGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.