Results 21 - 40 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 110682 | 0.72 | 0.712096 |
Target: 5'- gCCGcgcugcgugcGCGAGGGUGAGGgcGGCGCGcUCg -3' miRNA: 3'- gGGC----------CGUUUCCGUUCCauUCGCGU-AG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 32028 | 0.73 | 0.680842 |
Target: 5'- cUCCGGCGGGGcGCGGGGacGGCGCc-- -3' miRNA: 3'- -GGGCCGUUUC-CGUUCCauUCGCGuag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 95160 | 0.75 | 0.554412 |
Target: 5'- gCCGGCAu-GGCGGGG--GGCGCgAUCg -3' miRNA: 3'- gGGCCGUuuCCGUUCCauUCGCG-UAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 112086 | 0.78 | 0.407435 |
Target: 5'- aCCCGGCGGuccGGcGCAAGGUGgacuggcucgagcGGCGCGUg -3' miRNA: 3'- -GGGCCGUU---UC-CGUUCCAU-------------UCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 3939 | 0.71 | 0.781993 |
Target: 5'- gCUGGCGccgcGGCGGGGggGGCGcCGUCu -3' miRNA: 3'- gGGCCGUuu--CCGUUCCauUCGC-GUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 35837 | 0.72 | 0.732584 |
Target: 5'- cCCCGGCGGGcGGCGAuGGgc-GUGCAUa -3' miRNA: 3'- -GGGCCGUUU-CCGUU-CCauuCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 41546 | 0.73 | 0.649201 |
Target: 5'- aCCUgGGCGAuGGCAGaGUgcGAGCGCGUCg -3' miRNA: 3'- -GGG-CCGUUuCCGUUcCA--UUCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 95938 | 0.79 | 0.353684 |
Target: 5'- gCCCGGCGccggaacgcuggcGGGCGAGcGUGAGCGCAg- -3' miRNA: 3'- -GGGCCGUu------------UCCGUUC-CAUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 97012 | 0.72 | 0.732584 |
Target: 5'- -gCGGCGcuGGCcgcgGGGGgcAGCGCGUCc -3' miRNA: 3'- ggGCCGUuuCCG----UUCCauUCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 89570 | 0.8 | 0.317717 |
Target: 5'- gCCCGGCGAGGGCGuGG--AGCGCGa- -3' miRNA: 3'- -GGGCCGUUUCCGUuCCauUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 117036 | 0.73 | 0.659774 |
Target: 5'- gCCCGGCGGGGGCucgccGAGG-AGGCGgAa- -3' miRNA: 3'- -GGGCCGUUUCCG-----UUCCaUUCGCgUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 3972 | 0.72 | 0.722382 |
Target: 5'- -gCGGCGAGGGCGccgGGGgccGGGCGCGc- -3' miRNA: 3'- ggGCCGUUUCCGU---UCCa--UUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 6053 | 0.74 | 0.628018 |
Target: 5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3' miRNA: 3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 8614 | 0.74 | 0.575264 |
Target: 5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3' miRNA: 3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 119403 | 0.76 | 0.513445 |
Target: 5'- gUCGGCAuAGGCGcccuccAGGUu-GCGCAUCg -3' miRNA: 3'- gGGCCGUuUCCGU------UCCAuuCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 119539 | 0.77 | 0.417332 |
Target: 5'- gCCGGCAGgcuGGGCAAGGggcGCGCGg- -3' miRNA: 3'- gGGCCGUU---UCCGUUCCauuCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 25195 | 0.7 | 0.791483 |
Target: 5'- gCCCgaaggggagggGGCAAGaccGGCAAGGUGGGCuGCGg- -3' miRNA: 3'- -GGG-----------CCGUUU---CCGUUCCAUUCG-CGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 55498 | 0.71 | 0.781993 |
Target: 5'- cUCCGGCAGuGGUucGGcggcGAGCGCGUa -3' miRNA: 3'- -GGGCCGUUuCCGuuCCa---UUCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 82477 | 0.71 | 0.7527 |
Target: 5'- cCCCGGCcacGGGGCcgccgaAGGcGUAGGuCGCGUCu -3' miRNA: 3'- -GGGCCGu--UUCCG------UUC-CAUUC-GCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 81823 | 0.71 | 0.742694 |
Target: 5'- -gCGGCGugguccAGGCGAGGUccAGCGCGUa -3' miRNA: 3'- ggGCCGUu-----UCCGUUCCAu-UCGCGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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