miRNA display CGI


Results 41 - 60 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 88264 0.71 0.772359
Target:  5'- gCCgGGCGGGGaCGGGGgGAGCGCuUCg -3'
miRNA:   3'- -GGgCCGUUUCcGUUCCaUUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 41546 0.73 0.649201
Target:  5'- aCCUgGGCGAuGGCAGaGUgcGAGCGCGUCg -3'
miRNA:   3'- -GGG-CCGUUuCCGUUcCA--UUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 95938 0.79 0.353684
Target:  5'- gCCCGGCGccggaacgcuggcGGGCGAGcGUGAGCGCAg- -3'
miRNA:   3'- -GGGCCGUu------------UCCGUUC-CAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 32191 0.71 0.756671
Target:  5'- cCCCGGCcGgggcccgaggcccgcGGGCGGGGccgGGGCGCGg- -3'
miRNA:   3'- -GGGCCGuU---------------UCCGUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 89570 0.8 0.317717
Target:  5'- gCCCGGCGAGGGCGuGG--AGCGCGa- -3'
miRNA:   3'- -GGGCCGUUUCCGUuCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 84865 0.69 0.860298
Target:  5'- gCCCGGCu-AGGCGGcccacGUAcgcgcccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGuuUCCGUUc----CAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 119539 0.77 0.417332
Target:  5'- gCCGGCAGgcuGGGCAAGGggcGCGCGg- -3'
miRNA:   3'- gGGCCGUU---UCCGUUCCauuCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 152 0.69 0.844862
Target:  5'- cCCCGGCcgGGGGGcCGGGGUuc-UGCGUCu -3'
miRNA:   3'- -GGGCCG--UUUCC-GUUCCAuucGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 85052 0.7 0.83983
Target:  5'- gCCCGGCGc-GGCAgccuuggccgcgcccGGGUccGCGCcgCg -3'
miRNA:   3'- -GGGCCGUuuCCGU---------------UCCAuuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 61372 0.7 0.827808
Target:  5'- aCCGGC-GAGGCGucgcggaucAGGUAcuGCGCAa- -3'
miRNA:   3'- gGGCCGuUUCCGU---------UCCAUu-CGCGUag -5'
6666 5' -53.1 NC_001847.1 + 21698 0.7 0.81899
Target:  5'- gCCCGGCGAGGaGCcgGAGGaccAGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CG--UUCCau-UCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 25195 0.7 0.791483
Target:  5'- gCCCgaaggggagggGGCAAGaccGGCAAGGUGGGCuGCGg- -3'
miRNA:   3'- -GGG-----------CCGUUU---CCGUUCCAUUCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 55498 0.71 0.781993
Target:  5'- cUCCGGCAGuGGUucGGcggcGAGCGCGUa -3'
miRNA:   3'- -GGGCCGUUuCCGuuCCa---UUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 60018 0.71 0.746709
Target:  5'- cCCCGGCGGggcccgggccuucucGGGCAAGcGccgGGGCGCcgCc -3'
miRNA:   3'- -GGGCCGUU---------------UCCGUUC-Ca--UUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 97012 0.72 0.732584
Target:  5'- -gCGGCGcuGGCcgcgGGGGgcAGCGCGUCc -3'
miRNA:   3'- ggGCCGUuuCCG----UUCCauUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 110682 0.72 0.712096
Target:  5'- gCCGcgcugcgugcGCGAGGGUGAGGgcGGCGCGcUCg -3'
miRNA:   3'- gGGC----------CGUUUCCGUUCCauUCGCGU-AG- -5'
6666 5' -53.1 NC_001847.1 + 32028 0.73 0.680842
Target:  5'- cUCCGGCGGGGcGCGGGGacGGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CGUUCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 6053 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 8614 0.74 0.575264
Target:  5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3'
miRNA:   3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 119403 0.76 0.513445
Target:  5'- gUCGGCAuAGGCGcccuccAGGUu-GCGCAUCg -3'
miRNA:   3'- gGGCCGUuUCCGU------UCCAuuCGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.