miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 55498 0.71 0.781993
Target:  5'- cUCCGGCAGuGGUucGGcggcGAGCGCGUa -3'
miRNA:   3'- -GGGCCGUUuCCGuuCCa---UUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 93221 0.7 0.800819
Target:  5'- -aCGGCGAGGGCGAGGgcGAGgGUucuUCc -3'
miRNA:   3'- ggGCCGUUUCCGUUCCa-UUCgCGu--AG- -5'
6666 5' -53.1 NC_001847.1 + 42543 0.76 0.48355
Target:  5'- gCUCGGUGAGGGCGAGGacgcGGcCGCGUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCau--UC-GCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 51528 0.76 0.513445
Target:  5'- gCCGGC--AGGCGGGGgcGGCGCccaggcGUCg -3'
miRNA:   3'- gGGCCGuuUCCGUUCCauUCGCG------UAG- -5'
6666 5' -53.1 NC_001847.1 + 134650 0.74 0.606848
Target:  5'- gCCGGCAGcAGGCGcGG-AGGCGCGg- -3'
miRNA:   3'- gGGCCGUU-UCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 6147 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 25440 0.72 0.701738
Target:  5'- aCCgGGCAGGGGCGAGccaaaugcaaAAGCGCAa- -3'
miRNA:   3'- -GGgCCGUUUCCGUUCca--------UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 3972 0.72 0.722382
Target:  5'- -gCGGCGAGGGCGccgGGGgccGGGCGCGc- -3'
miRNA:   3'- ggGCCGUUUCCGU---UCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 35837 0.72 0.732584
Target:  5'- cCCCGGCGGGcGGCGAuGGgc-GUGCAUa -3'
miRNA:   3'- -GGGCCGUUU-CCGUU-CCauuCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 42310 0.71 0.7527
Target:  5'- aCCGGCGAagaGGGCGAGuguuucgugcuGUGGGCGCc-- -3'
miRNA:   3'- gGGCCGUU---UCCGUUC-----------CAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 69664 0.69 0.876431
Target:  5'- aCCCGGUAc--GCGuGGUAGGCaGCGUUg -3'
miRNA:   3'- -GGGCCGUuucCGUuCCAUUCG-CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 120918 0.69 0.876431
Target:  5'- --aGGCAuacgAGGGCGGGGcGGGCGCGc- -3'
miRNA:   3'- gggCCGU----UUCCGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 25357 0.7 0.827808
Target:  5'- gCCGGCAAGcugauGGCAGGGggcGGCgGCAg- -3'
miRNA:   3'- gGGCCGUUU-----CCGUUCCau-UCG-CGUag -5'
6666 5' -53.1 NC_001847.1 + 31694 0.7 0.836435
Target:  5'- gUCgGGCcucGGGGGCGGGGggAGGCGCGg- -3'
miRNA:   3'- -GGgCCG---UUUCCGUUCCa-UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 152 0.69 0.844862
Target:  5'- cCCCGGCcgGGGGGcCGGGGUuc-UGCGUCu -3'
miRNA:   3'- -GGGCCG--UUUCC-GUUCCAuucGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 84865 0.69 0.860298
Target:  5'- gCCCGGCu-AGGCGGcccacGUAcgcgcccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGuuUCCGUUc----CAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 68397 0.69 0.861089
Target:  5'- gCCCGGCGAAGGCcAGGa---CGCu-- -3'
miRNA:   3'- -GGGCCGUUUCCGuUCCauucGCGuag -5'
6666 5' -53.1 NC_001847.1 + 47402 0.69 0.868874
Target:  5'- gCCGGCuccguGAGGCc--GUGGGCgGCGUCu -3'
miRNA:   3'- gGGCCGu----UUCCGuucCAUUCG-CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 99751 0.69 0.868874
Target:  5'- gCCGGCAAAGcgaGCGuGGUcaAAGCGC-UCc -3'
miRNA:   3'- gGGCCGUUUC---CGUuCCA--UUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 96585 0.69 0.875686
Target:  5'- cUCCGGCAGcAGGCGcugccaguaacgcGGGUuuuccuuGCGCGUg -3'
miRNA:   3'- -GGGCCGUU-UCCGU-------------UCCAuu-----CGCGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.