Results 101 - 120 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 32938 | 0.68 | 0.910615 |
Target: 5'- gCCGGCGgcGGGGCcGGGggGGCGgAg- -3' miRNA: 3'- gGGCCGU--UUCCGuUCCauUCGCgUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 100616 | 0.67 | 0.916704 |
Target: 5'- gCCCGGC--GGGC------GGCGCAUCg -3' miRNA: 3'- -GGGCCGuuUCCGuuccauUCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 105225 | 0.67 | 0.916704 |
Target: 5'- aCCCGcgggcGCGcGGGCAcAGGcGGGCGCAcuUCg -3' miRNA: 3'- -GGGC-----CGUuUCCGU-UCCaUUCGCGU--AG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 96407 | 0.67 | 0.92757 |
Target: 5'- gCCGGCGgcGGCAAuggcggggccggcGGcAGGCGCGg- -3' miRNA: 3'- gGGCCGUuuCCGUU-------------CCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 72682 | 0.67 | 0.928117 |
Target: 5'- cCCCGGCccugcuGAGGcCGGGGaGAGCgGCcgCc -3' miRNA: 3'- -GGGCCGu-----UUCC-GUUCCaUUCG-CGuaG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 127344 | 0.69 | 0.861089 |
Target: 5'- gCCGGCugccgcGGCAGGGgcGGCGgGg- -3' miRNA: 3'- gGGCCGuuu---CCGUUCCauUCGCgUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 5284 | 0.69 | 0.844862 |
Target: 5'- aCCCGGggaCGGGGGUAcGGcGAGCGCGa- -3' miRNA: 3'- -GGGCC---GUUUCCGUuCCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 42543 | 0.76 | 0.48355 |
Target: 5'- gCUCGGUGAGGGCGAGGacgcGGcCGCGUCc -3' miRNA: 3'- -GGGCCGUUUCCGUUCCau--UC-GCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 51528 | 0.76 | 0.513445 |
Target: 5'- gCCGGC--AGGCGGGGgcGGCGCccaggcGUCg -3' miRNA: 3'- gGGCCGuuUCCGUUCCauUCGCG------UAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 134650 | 0.74 | 0.606848 |
Target: 5'- gCCGGCAGcAGGCGcGG-AGGCGCGg- -3' miRNA: 3'- gGGCCGUU-UCCGUuCCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 6147 | 0.74 | 0.628018 |
Target: 5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3' miRNA: 3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 25440 | 0.72 | 0.701738 |
Target: 5'- aCCgGGCAGGGGCGAGccaaaugcaaAAGCGCAa- -3' miRNA: 3'- -GGgCCGUUUCCGUUCca--------UUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 3972 | 0.72 | 0.722382 |
Target: 5'- -gCGGCGAGGGCGccgGGGgccGGGCGCGc- -3' miRNA: 3'- ggGCCGUUUCCGU---UCCa--UUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 35837 | 0.72 | 0.732584 |
Target: 5'- cCCCGGCGGGcGGCGAuGGgc-GUGCAUa -3' miRNA: 3'- -GGGCCGUUU-CCGUU-CCauuCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 42310 | 0.71 | 0.7527 |
Target: 5'- aCCGGCGAagaGGGCGAGuguuucgugcuGUGGGCGCc-- -3' miRNA: 3'- gGGCCGUU---UCCGUUC-----------CAUUCGCGuag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 81069 | 0.71 | 0.781993 |
Target: 5'- gCCGGCGAAGGCGGcGacGGCGCuggCg -3' miRNA: 3'- gGGCCGUUUCCGUUcCauUCGCGua-G- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 94131 | 0.7 | 0.800819 |
Target: 5'- gCCCGuuGCAGGacGGCAcgacgccggagcAGGUGAGCGCGg- -3' miRNA: 3'- -GGGC--CGUUU--CCGU------------UCCAUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 3254 | 0.7 | 0.827808 |
Target: 5'- gCCGGC---GGCAGGGgcgccGGCGCcgCg -3' miRNA: 3'- gGGCCGuuuCCGUUCCau---UCGCGuaG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 50436 | 0.7 | 0.833867 |
Target: 5'- aCCGGCGcaAAGGCAGcGccuucuacggccacGUGAGCGCcgCg -3' miRNA: 3'- gGGCCGU--UUCCGUU-C--------------CAUUCGCGuaG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 22137 | 0.69 | 0.844862 |
Target: 5'- gCCCGGCGgcGGCGGcGGc--GCGCAa- -3' miRNA: 3'- -GGGCCGUuuCCGUU-CCauuCGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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