Results 21 - 40 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 1415 | 0.66 | 0.956251 |
Target: 5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3' miRNA: 3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 31996 | 0.66 | 0.956251 |
Target: 5'- gCCCGGgAGGGacGCGGGcGUgGAGCGCGa- -3' miRNA: 3'- -GGGCCgUUUC--CGUUC-CA-UUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 4880 | 0.66 | 0.956251 |
Target: 5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3' miRNA: 3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 104228 | 0.66 | 0.956251 |
Target: 5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3' miRNA: 3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 84537 | 0.66 | 0.956251 |
Target: 5'- gUUGGCGggcGGGGCGGGGcguGCGCcUCg -3' miRNA: 3'- gGGCCGU---UUCCGUUCCauuCGCGuAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 107693 | 0.66 | 0.956251 |
Target: 5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3' miRNA: 3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 120397 | 0.66 | 0.956251 |
Target: 5'- -aCGGCGAGcGCGAGGcccGGCGCGc- -3' miRNA: 3'- ggGCCGUUUcCGUUCCau-UCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 105855 | 0.66 | 0.955856 |
Target: 5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3' miRNA: 3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 3042 | 0.66 | 0.955856 |
Target: 5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3' miRNA: 3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 28035 | 0.66 | 0.952187 |
Target: 5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3' miRNA: 3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 22096 | 0.66 | 0.952187 |
Target: 5'- gCCCGGCAGgcgcgccggGGGCGAcagcGGGCGCGc- -3' miRNA: 3'- -GGGCCGUU---------UCCGUUcca-UUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 32651 | 0.66 | 0.952187 |
Target: 5'- gCUGGa--GGGCGAGGUGgacGGCGCc-- -3' miRNA: 3'- gGGCCguuUCCGUUCCAU---UCGCGuag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 126619 | 0.66 | 0.952187 |
Target: 5'- gCCgGGaCAGAGGCGGGcGUcgAAGUGCccuUCu -3' miRNA: 3'- -GGgCC-GUUUCCGUUC-CA--UUCGCGu--AG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 130210 | 0.66 | 0.952187 |
Target: 5'- -gCGGCGcggAGGGCGcGGgAAGCGCGg- -3' miRNA: 3'- ggGCCGU---UUCCGUuCCaUUCGCGUag -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 56894 | 0.66 | 0.952187 |
Target: 5'- gCCGGCGAcGGCGAcgccGGcGGGCGgGUg -3' miRNA: 3'- gGGCCGUUuCCGUU----CCaUUCGCgUAg -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 95300 | 0.66 | 0.952187 |
Target: 5'- aCCGGCGGcuGGCGcgcgccacgcAGG-AAGCGC-UCg -3' miRNA: 3'- gGGCCGUUu-CCGU----------UCCaUUCGCGuAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 59574 | 0.66 | 0.952187 |
Target: 5'- gCCGGCGGAagcucuGGCu-GGcguGCGCGUCc -3' miRNA: 3'- gGGCCGUUU------CCGuuCCauuCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 130848 | 0.66 | 0.952187 |
Target: 5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3' miRNA: 3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 79304 | 0.66 | 0.952187 |
Target: 5'- gCCGGCu--GGCAGcu---GCGCGUCa -3' miRNA: 3'- gGGCCGuuuCCGUUccauuCGCGUAG- -5' |
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6666 | 5' | -53.1 | NC_001847.1 | + | 74378 | 0.66 | 0.952187 |
Target: 5'- gCgCGGUAGAGGCGcuGGGggaccGCGCGg- -3' miRNA: 3'- -GgGCCGUUUCCGU--UCCauu--CGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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