miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6667 5' -55.1 NC_001847.1 + 13551 0.66 0.926487
Target:  5'- gCCg-GGGCggCGcGGUGGGUUGCauugCCa -3'
miRNA:   3'- aGGagCUCGa-GU-CCACCCAACGaa--GG- -5'
6667 5' -55.1 NC_001847.1 + 66318 0.66 0.920953
Target:  5'- cUCUUCGcGGCgcccugcggCGGGUGGGgcGCgggcgCCg -3'
miRNA:   3'- -AGGAGC-UCGa--------GUCCACCCaaCGaa---GG- -5'
6667 5' -55.1 NC_001847.1 + 15650 0.66 0.896375
Target:  5'- -gCUCGGGCUCGGGcucGGGcucggGCUcugacucugacUCCg -3'
miRNA:   3'- agGAGCUCGAGUCCa--CCCaa---CGA-----------AGG- -5'
6667 5' -55.1 NC_001847.1 + 74347 0.67 0.889632
Target:  5'- gUCUggCGGGCgccaccaAGGUGGGcUGCUgcgCCu -3'
miRNA:   3'- -AGGa-GCUCGag-----UCCACCCaACGAa--GG- -5'
6667 5' -55.1 NC_001847.1 + 46437 0.67 0.882656
Target:  5'- cUCCUCGGGCgcggcGGUGGGgaUGCg--- -3'
miRNA:   3'- -AGGAGCUCGagu--CCACCCa-ACGaagg -5'
6667 5' -55.1 NC_001847.1 + 126116 0.67 0.860378
Target:  5'- -aCagGAGCUCGGGUGGGgucccgagUGagcUCCg -3'
miRNA:   3'- agGagCUCGAGUCCACCCa-------ACga-AGG- -5'
6667 5' -55.1 NC_001847.1 + 23303 0.67 0.860378
Target:  5'- -aCagGAGCUCGGGUGGGgucccgagUGagcUCCg -3'
miRNA:   3'- agGagCUCGAGUCCACCCa-------ACga-AGG- -5'
6667 5' -55.1 NC_001847.1 + 122822 0.68 0.84364
Target:  5'- aCCUCGAugGCgcgCAGGUGGGccgucaaguagucUUGCggggcacccccUUCCg -3'
miRNA:   3'- aGGAGCU--CGa--GUCCACCC-------------AACG-----------AAGG- -5'
6667 5' -55.1 NC_001847.1 + 77279 0.68 0.824312
Target:  5'- gUCCUUGAGCgcgcgcguggugaUCGGGUacagcgccuucaugGGGUUGCUg-- -3'
miRNA:   3'- -AGGAGCUCG-------------AGUCCA--------------CCCAACGAagg -5'
6667 5' -55.1 NC_001847.1 + 65119 0.7 0.744492
Target:  5'- -gCUCG-GCUgGcGGUGGGgcucgGCUUCCu -3'
miRNA:   3'- agGAGCuCGAgU-CCACCCaa---CGAAGG- -5'
6667 5' -55.1 NC_001847.1 + 129293 0.7 0.738575
Target:  5'- aCCUCGAGggccaggcggcucgcUUCGGGUGGGU-GCUgcaCg -3'
miRNA:   3'- aGGAGCUC---------------GAGUCCACCCAaCGAag-G- -5'
6667 5' -55.1 NC_001847.1 + 56381 0.71 0.684021
Target:  5'- aCCUCGGcGCUCGGGUcGGGgagGUcggCCg -3'
miRNA:   3'- aGGAGCU-CGAGUCCA-CCCaa-CGaa-GG- -5'
6667 5' -55.1 NC_001847.1 + 126325 0.75 0.461767
Target:  5'- uUCgCUCGAGCUCGGGUGGGggUGg---- -3'
miRNA:   3'- -AG-GAGCUCGAGUCCACCCa-ACgaagg -5'
6667 5' -55.1 NC_001847.1 + 23512 0.75 0.461767
Target:  5'- uUCgCUCGAGCUCGGGUGGGggUGg---- -3'
miRNA:   3'- -AG-GAGCUCGAGUCCACCCa-ACgaagg -5'
6667 5' -55.1 NC_001847.1 + 111661 1.13 0.001611
Target:  5'- uUCCUCGAGCUCAGGUGGGUUGCUUCCa -3'
miRNA:   3'- -AGGAGCUCGAGUCCACCCAACGAAGG- -5'
6667 5' -55.1 NC_001847.1 + 8848 1.13 0.001611
Target:  5'- uUCCUCGAGCUCAGGUGGGUUGCUUCCa -3'
miRNA:   3'- -AGGAGCUCGAGUCCACCCAACGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.