Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 97881 | 0.7 | 0.700786 |
Target: 5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3' miRNA: 3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 60676 | 0.7 | 0.721369 |
Target: 5'- aCAcGCCCAGCCcccGCUCguacUGCAGcGCc -3' miRNA: 3'- gGU-CGGGUCGGua-CGAGa---ACGUCuUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 50386 | 0.71 | 0.648424 |
Target: 5'- gCUGGCCgUGGCCAUGCUCgugcUGCGGuugguGCg -3' miRNA: 3'- -GGUCGG-GUCGGUACGAGa---ACGUCu----UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 82656 | 0.71 | 0.627317 |
Target: 5'- gUCAGCuCCA-CCAUGCUCUggGCgaAGAACu -3' miRNA: 3'- -GGUCG-GGUcGGUACGAGAa-CG--UCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 17747 | 0.71 | 0.627317 |
Target: 5'- gCGGCCaCGGCCucgcGCUC--GCAGAGCa -3' miRNA: 3'- gGUCGG-GUCGGua--CGAGaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 16911 | 0.71 | 0.648424 |
Target: 5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3' miRNA: 3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 134086 | 0.72 | 0.606226 |
Target: 5'- aCAGCCCGgcGCCGccgcuUGCUCUggcgaGCAGAGg -3' miRNA: 3'- gGUCGGGU--CGGU-----ACGAGAa----CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 109331 | 0.72 | 0.616765 |
Target: 5'- gCCuGCCCGGCCGacGCg---GCGGAGCa -3' miRNA: 3'- -GGuCGGGUCGGUa-CGagaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 63068 | 0.72 | 0.606226 |
Target: 5'- gCCAGCaCCAGCCA--CUCgucgccauggUGCGGGACc -3' miRNA: 3'- -GGUCG-GGUCGGUacGAGa---------ACGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 4610 | 0.72 | 0.606226 |
Target: 5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 124986 | 0.72 | 0.616765 |
Target: 5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3' miRNA: 3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 59327 | 0.72 | 0.616765 |
Target: 5'- gCCGGCggcgccguaCCAGCCcgGCaUCggggGCGGAGCg -3' miRNA: 3'- -GGUCG---------GGUCGGuaCG-AGaa--CGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 107423 | 0.72 | 0.606226 |
Target: 5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 115775 | 0.72 | 0.574761 |
Target: 5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3' miRNA: 3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 11566 | 0.72 | 0.56435 |
Target: 5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3' miRNA: 3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 70038 | 0.72 | 0.585216 |
Target: 5'- gCCAGCCgAGCCGcgGCUCgcucGCAGcuuAGCa -3' miRNA: 3'- -GGUCGGgUCGGUa-CGAGaa--CGUC---UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 22173 | 0.72 | 0.616765 |
Target: 5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3' miRNA: 3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 106049 | 0.73 | 0.543686 |
Target: 5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3' miRNA: 3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 96874 | 0.73 | 0.537534 |
Target: 5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3' miRNA: 3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 39490 | 0.73 | 0.55399 |
Target: 5'- aCCAGCCC-GCCGcgcagGCUCccGguGAACa -3' miRNA: 3'- -GGUCGGGuCGGUa----CGAGaaCguCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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