Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 35550 | 0.66 | 0.915013 |
Target: 5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3' miRNA: 3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 65448 | 0.66 | 0.915613 |
Target: 5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3' miRNA: 3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 35412 | 0.66 | 0.903136 |
Target: 5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3' miRNA: 3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 77498 | 0.66 | 0.903136 |
Target: 5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3' miRNA: 3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 131345 | 0.66 | 0.9095 |
Target: 5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3' miRNA: 3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 99756 | 0.66 | 0.9095 |
Target: 5'- gCCGGCCCGgcagugagccGCCGcgGCUUUggGCGGGGg -3' miRNA: 3'- -GGUCGGGU----------CGGUa-CGAGAa-CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 100830 | 0.66 | 0.9095 |
Target: 5'- cUCGGCCCGGgCG-GCUCcgGcCAGGGCc -3' miRNA: 3'- -GGUCGGGUCgGUaCGAGaaC-GUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 99378 | 0.66 | 0.9095 |
Target: 5'- cCCAGCCUAGCaCAcacUGCgugugUGUAGGGg -3' miRNA: 3'- -GGUCGGGUCG-GU---ACGaga--ACGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 75144 | 0.66 | 0.915613 |
Target: 5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3' miRNA: 3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 88649 | 0.66 | 0.915613 |
Target: 5'- gCCuGCUCAG-CGUGCUgUUGCGcGACu -3' miRNA: 3'- -GGuCGGGUCgGUACGAgAACGUcUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 111307 | 0.66 | 0.882569 |
Target: 5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3' miRNA: 3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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