Results 81 - 100 of 131 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 106828 | 0.67 | 0.851867 |
Target: 5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3' miRNA: 3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 112985 | 0.67 | 0.859876 |
Target: 5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3' miRNA: 3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 17310 | 0.67 | 0.859876 |
Target: 5'- -aGGUCgGGCCGguccGCUCUuguggUGCAGGGCc -3' miRNA: 3'- ggUCGGgUCGGUa---CGAGA-----ACGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 10172 | 0.67 | 0.859876 |
Target: 5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3' miRNA: 3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 33586 | 0.67 | 0.867668 |
Target: 5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3' miRNA: 3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 2607 | 0.67 | 0.867668 |
Target: 5'- gCgAGCCCGccgcGCCggagGUGCUUcgGCGGGACc -3' miRNA: 3'- -GgUCGGGU----CGG----UACGAGaaCGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 29770 | 0.67 | 0.867668 |
Target: 5'- gUCGGCCCuggcGGCCggGCUCUgGCcguuuguGGACg -3' miRNA: 3'- -GGUCGGG----UCGGuaCGAGAaCGu------CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 71089 | 0.67 | 0.867668 |
Target: 5'- gCCGGCgCGGCCAgagGCgagagGCGGAGu -3' miRNA: 3'- -GGUCGgGUCGGUa--CGagaa-CGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 90391 | 0.67 | 0.867668 |
Target: 5'- aCGGCCCccGGCCGuacgUGCUUgugGCGGGccACg -3' miRNA: 3'- gGUCGGG--UCGGU----ACGAGaa-CGUCU--UG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 65667 | 0.67 | 0.874487 |
Target: 5'- gCCAGCCCGGCCA-------GCAGGAg -3' miRNA: 3'- -GGUCGGGUCGGUacgagaaCGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 26535 | 0.67 | 0.875234 |
Target: 5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3' miRNA: 3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 56845 | 0.67 | 0.875234 |
Target: 5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3' miRNA: 3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 116334 | 0.67 | 0.875234 |
Target: 5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3' miRNA: 3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 129348 | 0.67 | 0.875234 |
Target: 5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3' miRNA: 3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 16472 | 0.67 | 0.875234 |
Target: 5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3' miRNA: 3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 118801 | 0.67 | 0.875234 |
Target: 5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3' miRNA: 3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 64744 | 0.67 | 0.878196 |
Target: 5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3' miRNA: 3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 101166 | 0.66 | 0.882569 |
Target: 5'- cCCAGCCCGGCCAgcgcGCcCggcGcCAGcGCg -3' miRNA: 3'- -GGUCGGGUCGGUa---CGaGaa-C-GUCuUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 120773 | 0.66 | 0.882569 |
Target: 5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3' miRNA: 3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 111307 | 0.66 | 0.882569 |
Target: 5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3' miRNA: 3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home