miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 111307 0.66 0.882569
Target:  5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 84917 0.66 0.889667
Target:  5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3'
miRNA:   3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 72837 0.66 0.889667
Target:  5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3'
miRNA:   3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 30674 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 100399 0.66 0.896524
Target:  5'- gCCAGCUCGGCC--GCgUCgaagGCGGAGu -3'
miRNA:   3'- -GGUCGGGUCGGuaCG-AGaa--CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 36859 0.66 0.896524
Target:  5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3'
miRNA:   3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 5119 0.66 0.896524
Target:  5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3'
miRNA:   3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 102045 0.66 0.896524
Target:  5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3'
miRNA:   3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5'
6668 3' -54.8 NC_001847.1 + 104324 0.66 0.903136
Target:  5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 109737 0.66 0.903136
Target:  5'- ---aCCUGGCCAaGCUCgaggGCGGGGCg -3'
miRNA:   3'- ggucGGGUCGGUaCGAGaa--CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 11641 0.66 0.903136
Target:  5'- gCAGCCCuGGCCccgGCcccgCUUGCGGcGGCc -3'
miRNA:   3'- gGUCGGG-UCGGua-CGa---GAACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 35412 0.66 0.903136
Target:  5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 59201 0.66 0.903136
Target:  5'- gUAGCCCGagccguccgcGCCGUGCgCUUGCAc--- -3'
miRNA:   3'- gGUCGGGU----------CGGUACGaGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 77498 0.66 0.903136
Target:  5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3'
miRNA:   3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 42020 0.66 0.9095
Target:  5'- gCAGCCCGGCCA-GCUUcgccCGGuACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaac-GUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.