miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 117235 0.69 0.755569
Target:  5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3'
miRNA:   3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 28348 0.69 0.751607
Target:  5'- gCAGCgCGGCCGUcauccgcccGCUgcUGCAGAGCc -3'
miRNA:   3'- gGUCGgGUCGGUA---------CGAgaACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 95752 0.69 0.747628
Target:  5'- -gAGCCCGGCCGgcgccgGCUCcccgacggcgucGCGGAGCu -3'
miRNA:   3'- ggUCGGGUCGGUa-----CGAGaa----------CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 1351 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 34541 0.69 0.741626
Target:  5'- cCCgAGCCUGGCCGggcUGCUCggccgcUGCAGcGGCg -3'
miRNA:   3'- -GG-UCGGGUCGGU---ACGAGa-----ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 85277 0.69 0.741626
Target:  5'- gCGGCCaAGaCCAUGaUCUUGUGGGACa -3'
miRNA:   3'- gGUCGGgUC-GGUACgAGAACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 104164 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 33074 0.7 0.721369
Target:  5'- gCGGCCCGcGCC-UGCcCUUGCugccGAACa -3'
miRNA:   3'- gGUCGGGU-CGGuACGaGAACGu---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 60676 0.7 0.721369
Target:  5'- aCAcGCCCAGCCcccGCUCguacUGCAGcGCc -3'
miRNA:   3'- gGU-CGGGUCGGua-CGAGa---ACGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 16202 0.7 0.721369
Target:  5'- aCUGGCCCGcGCCAUGCggCgUUGCAGc-- -3'
miRNA:   3'- -GGUCGGGU-CGGUACGa-G-AACGUCuug -5'
6668 3' -54.8 NC_001847.1 + 10135 0.7 0.721369
Target:  5'- gCgGGCCCGGCCGUaGCgCgaGCGGGAg -3'
miRNA:   3'- -GgUCGGGUCGGUA-CGaGaaCGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 109437 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 38384 0.7 0.711113
Target:  5'- aCCGGCaCUGGCaCcgGCUUcgGCGGAGCc -3'
miRNA:   3'- -GGUCG-GGUCG-GuaCGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 6624 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 87003 0.7 0.700786
Target:  5'- gCCGGCCCGGCgGUuaccugggccgcGC-CUcGCGGGACa -3'
miRNA:   3'- -GGUCGGGUCGgUA------------CGaGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 53073 0.7 0.700786
Target:  5'- cCCAgacGCCgAGCCcgGCUCagcguucgGCGGGGCg -3'
miRNA:   3'- -GGU---CGGgUCGGuaCGAGaa------CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 97881 0.7 0.700786
Target:  5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3'
miRNA:   3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 127850 0.7 0.690397
Target:  5'- -aGGCgCCGcGCCAgcgGCUCguacUGCGGAGCg -3'
miRNA:   3'- ggUCG-GGU-CGGUa--CGAGa---ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 48169 0.7 0.690397
Target:  5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5'
6668 3' -54.8 NC_001847.1 + 55764 0.7 0.690397
Target:  5'- gCGGCCguGCCcugaguacggGCUCggGCGGAACu -3'
miRNA:   3'- gGUCGGguCGGua--------CGAGaaCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.