miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 62565 0.67 0.851867
Target:  5'- -uGGCCCAGCCcgcGCaUCgcgUGCAGGu- -3'
miRNA:   3'- ggUCGGGUCGGua-CG-AGa--ACGUCUug -5'
6668 3' -54.8 NC_001847.1 + 63068 0.72 0.606226
Target:  5'- gCCAGCaCCAGCCA--CUCgucgccauggUGCGGGACc -3'
miRNA:   3'- -GGUCG-GGUCGGUacGAGa---------ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 64155 0.75 0.435721
Target:  5'- gCGGCCC-GCCAUGCaggccgCUUGCGcGGACg -3'
miRNA:   3'- gGUCGGGuCGGUACGa-----GAACGU-CUUG- -5'
6668 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 65448 0.66 0.915613
Target:  5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3'
miRNA:   3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5'
6668 3' -54.8 NC_001847.1 + 65667 0.67 0.874487
Target:  5'- gCCAGCCCGGCCA-------GCAGGAg -3'
miRNA:   3'- -GGUCGGGUCGGUacgagaaCGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 67905 0.8 0.220402
Target:  5'- gCCGGCCCAGUgGUcGCUCUU-CAGGACg -3'
miRNA:   3'- -GGUCGGGUCGgUA-CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 70038 0.72 0.585216
Target:  5'- gCCAGCCgAGCCGcgGCUCgcucGCAGcuuAGCa -3'
miRNA:   3'- -GGUCGGgUCGGUa-CGAGaa--CGUC---UUG- -5'
6668 3' -54.8 NC_001847.1 + 71089 0.67 0.867668
Target:  5'- gCCGGCgCGGCCAgagGCgagagGCGGAGu -3'
miRNA:   3'- -GGUCGgGUCGGUa--CGagaa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 72837 0.66 0.889667
Target:  5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3'
miRNA:   3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 74673 0.69 0.780839
Target:  5'- gCCGGCCgAGCC--GCg---GCAGGACg -3'
miRNA:   3'- -GGUCGGgUCGGuaCGagaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 75144 0.66 0.915613
Target:  5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3'
miRNA:   3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 77498 0.66 0.903136
Target:  5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3'
miRNA:   3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 78408 0.74 0.464014
Target:  5'- aCAGCUUGGCCA-GCUCgUUGCuGAGCa -3'
miRNA:   3'- gGUCGGGUCGGUaCGAG-AACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 78795 0.76 0.3996
Target:  5'- gCCGGCCCguGGCCAUGUcgcgCUUGUAGuAGCc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGa---GAACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 82279 0.68 0.817785
Target:  5'- aCGcGCUCGGCCAcGC-CUUGCuGGAGCu -3'
miRNA:   3'- gGU-CGGGUCGGUaCGaGAACG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 82656 0.71 0.627317
Target:  5'- gUCAGCuCCA-CCAUGCUCUggGCgaAGAACu -3'
miRNA:   3'- -GGUCG-GGUcGGUACGAGAa-CG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 82862 0.68 0.799634
Target:  5'- --cGUCCGGCaCGUGCUCgcccgUGCGGGcGCg -3'
miRNA:   3'- gguCGGGUCG-GUACGAGa----ACGUCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.