miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 104164 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 104324 0.66 0.903136
Target:  5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 104667 0.68 0.790312
Target:  5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3'
miRNA:   3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 105171 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 105555 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 106049 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 106828 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 107423 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 109331 0.72 0.616765
Target:  5'- gCCuGCCCGGCCGacGCg---GCGGAGCa -3'
miRNA:   3'- -GGuCGGGUCGGUa-CGagaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 109437 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 109737 0.66 0.903136
Target:  5'- ---aCCUGGCCAaGCUCgaggGCGGGGCg -3'
miRNA:   3'- ggucGGGUCGGUaCGAGaa--CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 109899 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6668 3' -54.8 NC_001847.1 + 111307 0.66 0.882569
Target:  5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 112247 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 112985 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 115775 0.72 0.574761
Target:  5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 115964 0.66 0.9095
Target:  5'- cCCcGCCCccGCCGUGCUgc-GCGGggUa -3'
miRNA:   3'- -GGuCGGGu-CGGUACGAgaaCGUCuuG- -5'
6668 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 117235 0.69 0.755569
Target:  5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3'
miRNA:   3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.