miRNA display CGI


Results 121 - 131 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 118801 0.67 0.875234
Target:  5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3'
miRNA:   3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 120773 0.66 0.882569
Target:  5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3'
miRNA:   3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 124986 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 127850 0.7 0.690397
Target:  5'- -aGGCgCCGcGCCAgcgGCUCguacUGCGGAGCg -3'
miRNA:   3'- ggUCG-GGU-CGGUa--CGAGa---ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 127941 0.74 0.473657
Target:  5'- aCGGCCCAGCCGcGCUCg---AGGACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaacgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 130475 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 131345 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 131451 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 134086 0.72 0.606226
Target:  5'- aCAGCCCGgcGCCGccgcuUGCUCUggcgaGCAGAGg -3'
miRNA:   3'- gGUCGGGU--CGGU-----ACGAGAa----CGUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.