miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 52766 0.67 0.851867
Target:  5'- aCCAGCCCgcaggucacgcGGCgCGcGCUCaugUGCAGuGCg -3'
miRNA:   3'- -GGUCGGG-----------UCG-GUaCGAGa--ACGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 50386 0.71 0.648424
Target:  5'- gCUGGCCgUGGCCAUGCUCgugcUGCGGuugguGCg -3'
miRNA:   3'- -GGUCGG-GUCGGUACGAGa---ACGUCu----UG- -5'
6668 3' -54.8 NC_001847.1 + 49120 0.67 0.843645
Target:  5'- aCCAGCgCAGCaGUGCcgucgUCUUGCccGAGCc -3'
miRNA:   3'- -GGUCGgGUCGgUACG-----AGAACGu-CUUG- -5'
6668 3' -54.8 NC_001847.1 + 48169 0.7 0.690397
Target:  5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5'
6668 3' -54.8 NC_001847.1 + 42020 0.66 0.9095
Target:  5'- gCAGCCCGGCCA-GCUUcgccCGGuACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaac-GUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 41094 0.67 0.851867
Target:  5'- gCCGGCCCAGCUgcgccugcacGUGgUUggcGCGGAAg -3'
miRNA:   3'- -GGUCGGGUCGG----------UACgAGaa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 39490 0.73 0.55399
Target:  5'- aCCAGCCC-GCCGcgcagGCUCccGguGAACa -3'
miRNA:   3'- -GGUCGGGuCGGUa----CGAGaaCguCUUG- -5'
6668 3' -54.8 NC_001847.1 + 38384 0.7 0.711113
Target:  5'- aCCGGCaCUGGCaCcgGCUUcgGCGGAGCc -3'
miRNA:   3'- -GGUCG-GGUCG-GuaCGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 36859 0.66 0.896524
Target:  5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3'
miRNA:   3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 35550 0.66 0.915013
Target:  5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3'
miRNA:   3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 35412 0.66 0.903136
Target:  5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 34541 0.69 0.741626
Target:  5'- cCCgAGCCUGGCCGggcUGCUCggccgcUGCAGcGGCg -3'
miRNA:   3'- -GG-UCGGGUCGGU---ACGAGa-----ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 33999 0.67 0.843645
Target:  5'- -gGGCCCAGCCuucgcgGCgg-UGCuGGGCa -3'
miRNA:   3'- ggUCGGGUCGGua----CGagaACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 33586 0.67 0.867668
Target:  5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3'
miRNA:   3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 33074 0.7 0.721369
Target:  5'- gCGGCCCGcGCC-UGCcCUUGCugccGAACa -3'
miRNA:   3'- gGUCGGGU-CGGuACGaGAACGu---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 31918 0.68 0.817785
Target:  5'- aCGGCCgCGGCCGcgGCUCcgcgGCGGGuaaGCg -3'
miRNA:   3'- gGUCGG-GUCGGUa-CGAGaa--CGUCU---UG- -5'
6668 3' -54.8 NC_001847.1 + 30674 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 29770 0.67 0.867668
Target:  5'- gUCGGCCCuggcGGCCggGCUCUgGCcguuuguGGACg -3'
miRNA:   3'- -GGUCGGG----UCGGuaCGAGAaCGu------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 28638 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 28532 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.