miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 28348 0.69 0.751607
Target:  5'- gCAGCgCGGCCGUcauccgcccGCUgcUGCAGAGCc -3'
miRNA:   3'- gGUCGgGUCGGUA---------CGAgaACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 27904 0.79 0.268913
Target:  5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3'
miRNA:   3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 27662 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 26535 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 25772 0.68 0.798709
Target:  5'- gCAGCCCAGCUgcgcccauuccgcGUGCUCg-GCcucGAGCu -3'
miRNA:   3'- gGUCGGGUCGG-------------UACGAGaaCGu--CUUG- -5'
6668 3' -54.8 NC_001847.1 + 22173 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 20492 0.67 0.851867
Target:  5'- aCGGCCUguauGCUAUGCUCccGCcGGACu -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 17747 0.71 0.627317
Target:  5'- gCGGCCaCGGCCucgcGCUC--GCAGAGCa -3'
miRNA:   3'- gGUCGG-GUCGGua--CGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 17310 0.67 0.859876
Target:  5'- -aGGUCgGGCCGguccGCUCUuguggUGCAGGGCc -3'
miRNA:   3'- ggUCGGgUCGGUa---CGAGA-----ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 16911 0.71 0.648424
Target:  5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3'
miRNA:   3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 16202 0.7 0.721369
Target:  5'- aCUGGCCCGcGCCAUGCggCgUUGCAGc-- -3'
miRNA:   3'- -GGUCGGGU-CGGUACGa-G-AACGUCuug -5'
6668 3' -54.8 NC_001847.1 + 14381 0.74 0.473657
Target:  5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3'
miRNA:   3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 11641 0.66 0.903136
Target:  5'- gCAGCCCuGGCCccgGCcccgCUUGCGGcGGCc -3'
miRNA:   3'- gGUCGGG-UCGGua-CGa---GAACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 11566 0.72 0.56435
Target:  5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3'
miRNA:   3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5'
6668 3' -54.8 NC_001847.1 + 10172 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 10135 0.7 0.721369
Target:  5'- gCgGGCCCGGCCGUaGCgCgaGCGGGAg -3'
miRNA:   3'- -GgUCGGGUCGGUA-CGaGaaCGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6668 3' -54.8 NC_001847.1 + 9434 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 7086 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.