miRNA display CGI


Results 121 - 131 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 6624 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 5119 0.66 0.896524
Target:  5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3'
miRNA:   3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 4610 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 4015 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 3236 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 2742 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 2607 0.67 0.867668
Target:  5'- gCgAGCCCGccgcGCCggagGUGCUUcgGCGGGACc -3'
miRNA:   3'- -GgUCGGGU----CGG----UACGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 2358 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 1854 0.68 0.790312
Target:  5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3'
miRNA:   3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 1351 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.