miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 124986 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 102045 0.66 0.896524
Target:  5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3'
miRNA:   3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5'
6668 3' -54.8 NC_001847.1 + 117235 0.69 0.755569
Target:  5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3'
miRNA:   3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 96874 0.73 0.537534
Target:  5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3'
miRNA:   3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 36859 0.66 0.896524
Target:  5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3'
miRNA:   3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 95752 0.69 0.747628
Target:  5'- -gAGCCCGGCCGgcgccgGCUCcccgacggcgucGCGGAGCu -3'
miRNA:   3'- ggUCGGGUCGGUa-----CGAGaa----------CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 85277 0.69 0.741626
Target:  5'- gCGGCCaAGaCCAUGaUCUUGUGGGACa -3'
miRNA:   3'- gGUCGGgUC-GGUACgAGAACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 60676 0.7 0.721369
Target:  5'- aCAcGCCCAGCCcccGCUCguacUGCAGcGCc -3'
miRNA:   3'- gGU-CGGGUCGGua-CGAGa---ACGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 104164 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6668 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 84917 0.66 0.889667
Target:  5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3'
miRNA:   3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 72837 0.66 0.889667
Target:  5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3'
miRNA:   3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 5119 0.66 0.896524
Target:  5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3'
miRNA:   3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.