miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 82279 0.68 0.817785
Target:  5'- aCGcGCUCGGCCAcGC-CUUGCuGGAGCu -3'
miRNA:   3'- gGU-CGGGUCGGUaCGaGAACG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 130475 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6668 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 84917 0.66 0.889667
Target:  5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3'
miRNA:   3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 72837 0.66 0.889667
Target:  5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3'
miRNA:   3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 105555 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 33999 0.67 0.843645
Target:  5'- -gGGCCCAGCCuucgcgGCgg-UGCuGGGCa -3'
miRNA:   3'- ggUCGGGUCGGua----CGagaACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 106828 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 112985 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 2607 0.67 0.867668
Target:  5'- gCgAGCCCGccgcGCCggagGUGCUUcgGCGGGACc -3'
miRNA:   3'- -GgUCGGGU----CGG----UACGAGaaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 29770 0.67 0.867668
Target:  5'- gUCGGCCCuggcGGCCggGCUCUgGCcguuuguGGACg -3'
miRNA:   3'- -GGUCGGG----UCGGuaCGAGAaCGu------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 71089 0.67 0.867668
Target:  5'- gCCGGCgCGGCCAgagGCgagagGCGGAGu -3'
miRNA:   3'- -GGUCGgGUCGGUa--CGagaa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 90391 0.67 0.867668
Target:  5'- aCGGCCCccGGCCGuacgUGCUUgugGCGGGccACg -3'
miRNA:   3'- gGUCGGG--UCGGU----ACGAGaa-CGUCU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.