miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6668 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 131345 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 99756 0.66 0.9095
Target:  5'- gCCGGCCCGgcagugagccGCCGcgGCUUUggGCGGGGg -3'
miRNA:   3'- -GGUCGGGU----------CGGUa-CGAGAa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 25772 0.68 0.798709
Target:  5'- gCAGCCCAGCUgcgcccauuccgcGUGCUCg-GCcucGAGCu -3'
miRNA:   3'- gGUCGGGUCGG-------------UACGAGaaCGu--CUUG- -5'
6668 3' -54.8 NC_001847.1 + 82862 0.68 0.799634
Target:  5'- --cGUCCGGCaCGUGCUCgcccgUGCGGGcGCg -3'
miRNA:   3'- gguCGGGUCG-GUACGAGa----ACGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 109899 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6668 3' -54.8 NC_001847.1 + 31918 0.68 0.817785
Target:  5'- aCGGCCgCGGCCGcgGCUCcgcgGCGGGuaaGCg -3'
miRNA:   3'- gGUCGG-GUCGGUa-CGAGaa--CGUCU---UG- -5'
6668 3' -54.8 NC_001847.1 + 105171 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 82279 0.68 0.817785
Target:  5'- aCGcGCUCGGCCAcGC-CUUGCuGGAGCu -3'
miRNA:   3'- gGU-CGGGUCGGUaCGaGAACG-UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 130475 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 105555 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 33999 0.67 0.843645
Target:  5'- -gGGCCCAGCCuucgcgGCgg-UGCuGGGCa -3'
miRNA:   3'- ggUCGGGUCGGua----CGagaACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 112985 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 106828 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 75144 0.66 0.915613
Target:  5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3'
miRNA:   3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 99378 0.66 0.9095
Target:  5'- cCCAGCCUAGCaCAcacUGCgugugUGUAGGGg -3'
miRNA:   3'- -GGUCGGGUCG-GU---ACGaga--ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 53110 0.66 0.9095
Target:  5'- gCGGCCC-GCCAgcgGCUgCUUGCcauccucGGGCa -3'
miRNA:   3'- gGUCGGGuCGGUa--CGA-GAACGu------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 100830 0.66 0.9095
Target:  5'- cUCGGCCCGGgCG-GCUCcgGcCAGGGCc -3'
miRNA:   3'- -GGUCGGGUCgGUaCGAGaaC-GUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.