Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 36859 | 0.66 | 0.896524 |
Target: 5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3' miRNA: 3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 102045 | 0.66 | 0.896524 |
Target: 5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3' miRNA: 3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 78975 | 0.66 | 0.896524 |
Target: 5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3' miRNA: 3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 100399 | 0.66 | 0.896524 |
Target: 5'- gCCAGCUCGGCC--GCgUCgaagGCGGAGu -3' miRNA: 3'- -GGUCGGGUCGGuaCG-AGaa--CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 3054 | 0.66 | 0.895849 |
Target: 5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3' miRNA: 3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 30674 | 0.66 | 0.889667 |
Target: 5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3' miRNA: 3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 80291 | 0.66 | 0.889667 |
Target: 5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3' miRNA: 3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 84917 | 0.66 | 0.889667 |
Target: 5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3' miRNA: 3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 72837 | 0.66 | 0.889667 |
Target: 5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3' miRNA: 3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 133487 | 0.66 | 0.889667 |
Target: 5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3' miRNA: 3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 9641 | 0.66 | 0.882569 |
Target: 5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3' miRNA: 3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 111307 | 0.66 | 0.882569 |
Target: 5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3' miRNA: 3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 101166 | 0.66 | 0.882569 |
Target: 5'- cCCAGCCCGGCCAgcgcGCcCggcGcCAGcGCg -3' miRNA: 3'- -GGUCGGGUCGGUa---CGaGaa-C-GUCuUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 120773 | 0.66 | 0.882569 |
Target: 5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3' miRNA: 3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 64744 | 0.67 | 0.878196 |
Target: 5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3' miRNA: 3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 116334 | 0.67 | 0.875234 |
Target: 5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3' miRNA: 3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 129348 | 0.67 | 0.875234 |
Target: 5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3' miRNA: 3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 118801 | 0.67 | 0.875234 |
Target: 5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3' miRNA: 3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 56845 | 0.67 | 0.875234 |
Target: 5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3' miRNA: 3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 16472 | 0.67 | 0.875234 |
Target: 5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3' miRNA: 3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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