miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 90391 0.67 0.867668
Target:  5'- aCGGCCCccGGCCGuacgUGCUUgugGCGGGccACg -3'
miRNA:   3'- gGUCGGG--UCGGU----ACGAGaa-CGUCU--UG- -5'
6668 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 41094 0.67 0.851867
Target:  5'- gCCGGCCCAGCUgcgccugcacGUGgUUggcGCGGAAg -3'
miRNA:   3'- -GGUCGGGUCGG----------UACgAGaa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 65667 0.67 0.874487
Target:  5'- gCCAGCCCGGCCA-------GCAGGAg -3'
miRNA:   3'- -GGUCGGGUCGGUacgagaaCGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 33586 0.67 0.867668
Target:  5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3'
miRNA:   3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 10172 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 17310 0.67 0.859876
Target:  5'- -aGGUCgGGCCGguccGCUCUuguggUGCAGGGCc -3'
miRNA:   3'- ggUCGGgUCGGUa---CGAGA-----ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 118801 0.67 0.875234
Target:  5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3'
miRNA:   3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 56845 0.67 0.875234
Target:  5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3'
miRNA:   3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 52766 0.67 0.851867
Target:  5'- aCCAGCCCgcaggucacgcGGCgCGcGCUCaugUGCAGuGCg -3'
miRNA:   3'- -GGUCGGG-----------UCG-GUaCGAGa--ACGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 26535 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 20492 0.67 0.851867
Target:  5'- aCGGCCUguauGCUAUGCUCccGCcGGACu -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 4015 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 62565 0.67 0.851867
Target:  5'- -uGGCCCAGCCcgcGCaUCgcgUGCAGGu- -3'
miRNA:   3'- ggUCGGGUCGGua-CG-AGa--ACGUCUug -5'
6668 3' -54.8 NC_001847.1 + 49120 0.67 0.843645
Target:  5'- aCCAGCgCAGCaGUGCcgucgUCUUGCccGAGCc -3'
miRNA:   3'- -GGUCGgGUCGgUACG-----AGAACGu-CUUG- -5'
6668 3' -54.8 NC_001847.1 + 60482 0.67 0.843645
Target:  5'- gCGGCUCGGCCG-GCUCcaggcGCAGcAGCu -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa---CGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 105555 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.