miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 3' -70.4 NC_001847.1 + 2755 0.66 0.309716
Target:  5'- cCGGcGCGGcGGCGCCGgcgccggcgcCCCCGcCGG-Cg -3'
miRNA:   3'- -GCCcCGCC-CCGCGGC----------GGGGC-GCCaGa -5'
6669 3' -70.4 NC_001847.1 + 28048 0.66 0.309716
Target:  5'- cCGaGGCGGGGgCGgCGCCCCucaaggccgaaGCGGg-- -3'
miRNA:   3'- -GCcCCGCCCC-GCgGCGGGG-----------CGCCaga -5'
6669 3' -70.4 NC_001847.1 + 31457 0.66 0.309716
Target:  5'- cCGGcGCGGGcCGCCGCCgCGCGuGg-- -3'
miRNA:   3'- -GCCcCGCCCcGCGGCGGgGCGC-Caga -5'
6669 3' -70.4 NC_001847.1 + 58731 0.66 0.309716
Target:  5'- cCGccGCGGGGUGCCcCCgCCGCGGcCc -3'
miRNA:   3'- -GCccCGCCCCGCGGcGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 123038 0.66 0.309067
Target:  5'- gGGGGCcgcuGgaaguacggccgcGGGCGCCGgaCCCGCGGcgCUc -3'
miRNA:   3'- gCCCCG----C-------------CCCGCGGCg-GGGCGCCa-GA- -5'
6669 3' -70.4 NC_001847.1 + 34111 0.66 0.309067
Target:  5'- gCGGcGGCGGagccugcGGCGCCugccgcggugGCCgCCGCGG-Cg -3'
miRNA:   3'- -GCC-CCGCC-------CCGCGG----------CGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 35638 0.66 0.309067
Target:  5'- uGGGGCcagcgcuGGaccGCGCCGCCUCgGCGGcCg -3'
miRNA:   3'- gCCCCG-------CCc--CGCGGCGGGG-CGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 31318 0.66 0.307771
Target:  5'- cCGcGGGCGGcGGCcugguggagcgcguGCCGCCgCCgGCGG-Cg -3'
miRNA:   3'- -GC-CCCGCC-CCG--------------CGGCGG-GG-CGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 134131 0.66 0.307771
Target:  5'- cCGcGGGCGGcGGCcugguggagcgcguGCCGCCgCCgGCGG-Cg -3'
miRNA:   3'- -GC-CCCGCC-CCG--------------CGGCGG-GG-CGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 52686 0.66 0.30327
Target:  5'- cCGGGGCcGGGC-CCGCCgCGCcuGGa-- -3'
miRNA:   3'- -GCCCCGcCCCGcGGCGGgGCG--CCaga -5'
6669 3' -70.4 NC_001847.1 + 66810 0.66 0.30327
Target:  5'- uCGGuaGGCGGGGCGCUGgU-CGCGGg-- -3'
miRNA:   3'- -GCC--CCGCCCCGCGGCgGgGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 80030 0.66 0.30327
Target:  5'- gCGGGG-GGGGUcggcgucaucGCCGCCgCCGaGGUg- -3'
miRNA:   3'- -GCCCCgCCCCG----------CGGCGG-GGCgCCAga -5'
6669 3' -70.4 NC_001847.1 + 89091 0.66 0.30327
Target:  5'- cCGGGaguaccGCGugcgcacagaaGGcaGCGCCGCCCCGgUGGUCg -3'
miRNA:   3'- -GCCC------CGC-----------CC--CGCGGCGGGGC-GCCAGa -5'
6669 3' -70.4 NC_001847.1 + 32992 0.66 0.30327
Target:  5'- uGcGGCGGGccGCGCCGCC--GUGGUCg -3'
miRNA:   3'- gCcCCGCCC--CGCGGCGGggCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 87683 0.66 0.30327
Target:  5'- cCGGGcGCuGGGGCugcuGCgGCgCCGCGG-Cg -3'
miRNA:   3'- -GCCC-CG-CCCCG----CGgCGgGGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 18855 0.66 0.30327
Target:  5'- aCGGGucaGCGGGGCacGCUGCCUCGCc---- -3'
miRNA:   3'- -GCCC---CGCCCCG--CGGCGGGGCGccaga -5'
6669 3' -70.4 NC_001847.1 + 117574 0.66 0.30327
Target:  5'- aCGGGG-GGcGCGCUGCCCgGCcaaaacGUCUg -3'
miRNA:   3'- -GCCCCgCCcCGCGGCGGGgCGc-----CAGA- -5'
6669 3' -70.4 NC_001847.1 + 59138 0.66 0.302631
Target:  5'- gCGcGGGUGGucccaguuguaccGGCGCCGCUuggccagggggCgGCGGUCg -3'
miRNA:   3'- -GC-CCCGCC-------------CCGCGGCGG-----------GgCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 90831 0.66 0.299453
Target:  5'- --aGGCGGGGCGagaucagcgagcggCGCCCCGgGGcCg -3'
miRNA:   3'- gccCCGCCCCGCg-------------GCGGGGCgCCaGa -5'
6669 3' -70.4 NC_001847.1 + 38280 0.66 0.299453
Target:  5'- gCGcGGGCGGcGGCagguggcggcagcgGCaaccguguagccaaCGCCCgCGCGGUCg -3'
miRNA:   3'- -GC-CCCGCC-CCG--------------CG--------------GCGGG-GCGCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.