miRNA display CGI


Results 61 - 80 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 18508 0.73 0.169693
Target:  5'- cGCGGcuGCCGaGGCCaGCGCUGCGGGc- -3'
miRNA:   3'- -CGCUacCGGC-CCGG-CGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 18682 0.7 0.268298
Target:  5'- cGCGA-GGCCccgcagcacGGCCcgcgucaccgccaGCGCCGCGGGGa -3'
miRNA:   3'- -CGCUaCCGGc--------CCGG-------------CGCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 19314 0.68 0.333996
Target:  5'- cGCGGccgcGGCCGuGGCUguuaacgcaaGCGCCGCGGccGGGu -3'
miRNA:   3'- -CGCUa---CCGGC-CCGG----------CGCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 19372 0.67 0.378281
Target:  5'- aCGGUGGCCaGGGCCGCcGCCaucaaGCcGGuGu -3'
miRNA:   3'- cGCUACCGG-CCCGGCG-CGG-----CGcCCuC- -5'
6670 3' -66.1 NC_001847.1 + 19497 0.72 0.195424
Target:  5'- -aGAacGUCGGGUCGUGUCGCGGGAu -3'
miRNA:   3'- cgCUacCGGCCCGGCGCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 19724 0.68 0.341106
Target:  5'- cGCGAcgagguUGGCCggacgcggcGGGCCGCuuaGCGGGAa -3'
miRNA:   3'- -CGCU------ACCGG---------CCCGGCGcggCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 20273 0.66 0.451693
Target:  5'- gGCGA-GGUCGGcGCCGCG-CGUcGGAa -3'
miRNA:   3'- -CGCUaCCGGCC-CGGCGCgGCGcCCUc -5'
6670 3' -66.1 NC_001847.1 + 20893 0.68 0.326995
Target:  5'- ----cGGCUGGGCagcgagCGCGUCGCGGGcGa -3'
miRNA:   3'- cgcuaCCGGCCCG------GCGCGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 21493 0.7 0.25717
Target:  5'- gGCGAaggaauuuGCCGGG-CGCGCCucgGCGGGGGc -3'
miRNA:   3'- -CGCUac------CGGCCCgGCGCGG---CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 21622 0.74 0.147035
Target:  5'- gGCGGcgcuUGGCCggcgcGGGCCGCGCC-CGGGc- -3'
miRNA:   3'- -CGCU----ACCGG-----CCCGGCGCGGcGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 21732 0.81 0.042282
Target:  5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 21785 0.68 0.326995
Target:  5'- gGCGccGGCCGGGCgcgggucccCGgGCC-CGGGGa -3'
miRNA:   3'- -CGCuaCCGGCCCG---------GCgCGGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 21887 0.66 0.459459
Target:  5'- cGCGGUGGgcgaCGagacgaaggagacGGCCGagGCCGCGGGcGa -3'
miRNA:   3'- -CGCUACCg---GC-------------CCGGCg-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 22386 0.71 0.208079
Target:  5'- gGCaGAaGGCgccCGGGCCGCGgcgagcgugcucguCCGCGGGGGc -3'
miRNA:   3'- -CG-CUaCCG---GCCCGGCGC--------------GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 22516 0.74 0.140117
Target:  5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3'
miRNA:   3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 22619 0.71 0.234981
Target:  5'- aGCGAgUGGCCGcgcaGGgCGCGuCCG-GGGAGg -3'
miRNA:   3'- -CGCU-ACCGGC----CCgGCGC-GGCgCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 22905 0.7 0.251467
Target:  5'- aGC-AUGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcUACCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 22962 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 22994 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 23052 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.