miRNA display CGI


Results 41 - 60 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 128742 0.67 0.421373
Target:  5'- gGUGGUGGCCGuggagagaauggagcGGCUagggccaaaggGgGCCGCGGGcGg -3'
miRNA:   3'- -CGCUACCGGC---------------CCGG-----------CgCGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 127336 0.66 0.442301
Target:  5'- cCGAggcGGCCGGcuGCCGCggcagggGCgGCGGGGc -3'
miRNA:   3'- cGCUa--CCGGCC--CGGCG-------CGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 127204 0.73 0.157998
Target:  5'- cGCGAacuCCGGcGCgGCGCgCGCGGGAGg -3'
miRNA:   3'- -CGCUaccGGCC-CGgCGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 127076 0.68 0.348326
Target:  5'- gGCGGUGccccccucugcGCgCGGGCCGCGCgGCuuuGGGu- -3'
miRNA:   3'- -CGCUAC-----------CG-GCCCGGCGCGgCG---CCCuc -5'
6670 3' -66.1 NC_001847.1 + 125985 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125945 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125865 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125807 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125775 0.67 0.370632
Target:  5'- uGgGGUgGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CgCUA-CCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125747 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125718 0.7 0.251467
Target:  5'- aGC-AUGGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcUACCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125492 0.66 0.451693
Target:  5'- cGCGAggacgcccGGCugcucgagcggCGGGCCgGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUa-------CCG-----------GCCCGG-CGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125432 0.71 0.234981
Target:  5'- aGCGAgUGGCCGcgcaGGgCGCGuCCG-GGGAGg -3'
miRNA:   3'- -CGCU-ACCGGC----CCgGCGC-GGCgCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 125329 0.74 0.140117
Target:  5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3'
miRNA:   3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 125199 0.71 0.208079
Target:  5'- gGCaGAaGGCgccCGGGCCGCGgcgagcgugcucguCCGCGGGGGc -3'
miRNA:   3'- -CG-CUaCCG---GCCCGGCGC--------------GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 125013 0.68 0.348326
Target:  5'- cGCGcuacGGCCGGGCCcgcuCGCCGCGaaGGcGg -3'
miRNA:   3'- -CGCua--CCGGCCCGGc---GCGGCGC--CCuC- -5'
6670 3' -66.1 NC_001847.1 + 124723 0.66 0.44315
Target:  5'- -aGAcGGCCGaGGCCGCGggcgagGCGGaGAGa -3'
miRNA:   3'- cgCUaCCGGC-CCGGCGCgg----CGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 124598 0.68 0.326995
Target:  5'- gGCGccGGCCGGGCgcgggucccCGgGCC-CGGGGa -3'
miRNA:   3'- -CGCuaCCGGCCCG---------GCgCGGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 124545 0.81 0.042282
Target:  5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 124435 0.74 0.147035
Target:  5'- gGCGGcgcuUGGCCggcgcGGGCCGCGCC-CGGGc- -3'
miRNA:   3'- -CGCU----ACCGG-----CCCGGCGCGGcGCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.