Results 41 - 60 of 459 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 133973 | 0.79 | 0.061874 |
Target: 5'- gGCGGUGGCCuucugcgcGGCCGCGCUGCcGGAGc -3' miRNA: 3'- -CGCUACCGGc-------CCGGCGCGGCGcCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 93128 | 0.8 | 0.055922 |
Target: 5'- gGCGAagcUGGCCGGGCUGCcggcgccccCCGCGGGAa -3' miRNA: 3'- -CGCU---ACCGGCCCGGCGc--------GGCGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 116453 | 0.8 | 0.04926 |
Target: 5'- gGCGGUGaCgCGGGCCGUGCUGCGGGGc -3' miRNA: 3'- -CGCUACcG-GCCCGGCGCGGCGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 124545 | 0.81 | 0.042282 |
Target: 5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3' miRNA: 3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 132791 | 0.83 | 0.032741 |
Target: 5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3' miRNA: 3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 41628 | 0.75 | 0.118193 |
Target: 5'- cGUGAUGGCCGcGaGCggCGCGCCGgGGGGc -3' miRNA: 3'- -CGCUACCGGC-C-CG--GCGCGGCgCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 135024 | 0.75 | 0.121117 |
Target: 5'- cCGcgGGCgGGGCCGgGgCGCGGGGc -3' miRNA: 3'- cGCuaCCGgCCCGGCgCgGCGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 53862 | 0.74 | 0.143538 |
Target: 5'- gGCGcUGG-CGGcGCCGacCGCCGCGGGGGc -3' miRNA: 3'- -CGCuACCgGCC-CGGC--GCGGCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 52588 | 0.74 | 0.143538 |
Target: 5'- gGCGgcGGCCGaGGCCGaGCCcGCGGGcGg -3' miRNA: 3'- -CGCuaCCGGC-CCGGCgCGG-CGCCCuC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 96863 | 0.74 | 0.143538 |
Target: 5'- gGCGGUGGgCGGcgguCCGCGCUG-GGGAGg -3' miRNA: 3'- -CGCUACCgGCCc---GGCGCGGCgCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 131128 | 0.74 | 0.140117 |
Target: 5'- cGCGAgaggcggGcGCCGGGCCcgGCGCCccGCGGGGc -3' miRNA: 3'- -CGCUa------C-CGGCCCGG--CGCGG--CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 80817 | 0.74 | 0.140117 |
Target: 5'- gGCGAaGGCCGcGcGCCGCGaCUGgGGGGGc -3' miRNA: 3'- -CGCUaCCGGC-C-CGGCGC-GGCgCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 125329 | 0.74 | 0.140117 |
Target: 5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3' miRNA: 3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 48820 | 0.74 | 0.136771 |
Target: 5'- gGgGAUGuCCGGGCCuuGCCGCGcGGGGg -3' miRNA: 3'- -CgCUACcGGCCCGGcgCGGCGC-CCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 132709 | 0.74 | 0.133498 |
Target: 5'- gGCGgcGGCCcuGCCGgcCGCCGCGGGGGc -3' miRNA: 3'- -CGCuaCCGGccCGGC--GCGGCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 106819 | 0.74 | 0.133498 |
Target: 5'- cGCGggGcGCCGGGCCcgGCGCCcgccucucGCGGGGc -3' miRNA: 3'- -CGCuaC-CGGCCCGG--CGCGG--------CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 134920 | 0.74 | 0.130298 |
Target: 5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3' miRNA: 3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 30021 | 0.74 | 0.129982 |
Target: 5'- aGCGcUGGCCGcgucuauGGCCGCgGCCGUGGGcGa -3' miRNA: 3'- -CGCuACCGGC-------CCGGCG-CGGCGCCCuC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 2508 | 0.75 | 0.128412 |
Target: 5'- cGCGAgGGCCGccucgcgcuuugcuGCCGgGCCGCGGGAc -3' miRNA: 3'- -CGCUaCCGGCc-------------CGGCgCGGCGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 34137 | 0.75 | 0.124109 |
Target: 5'- cGCGGUGGCCGccgcGGCgagCGCGCUGCGcGAGg -3' miRNA: 3'- -CGCUACCGGC----CCG---GCGCGGCGCcCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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