Results 61 - 80 of 459 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 134920 | 0.74 | 0.130298 |
Target: 5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3' miRNA: 3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 106819 | 0.74 | 0.133498 |
Target: 5'- cGCGggGcGCCGGGCCcgGCGCCcgccucucGCGGGGc -3' miRNA: 3'- -CGCuaC-CGGCCCGG--CGCGG--------CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 134214 | 0.73 | 0.154264 |
Target: 5'- gGCGcgGGCuCGGGCUucccgGCGCCgGCGGGcGg -3' miRNA: 3'- -CGCuaCCG-GCCCGG-----CGCGG-CGCCCuC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 81156 | 0.73 | 0.157998 |
Target: 5'- aGCGAcgacUGGCCc-GCCGCGCCGCucGGAGg -3' miRNA: 3'- -CGCU----ACCGGccCGGCGCGGCGc-CCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 87923 | 0.73 | 0.157998 |
Target: 5'- gGCGuggGGCUGggcgcGGCCGCGCaCGCGGuGAGc -3' miRNA: 3'- -CGCua-CCGGC-----CCGGCGCG-GCGCC-CUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 122134 | 0.73 | 0.157998 |
Target: 5'- cGCGAcGGCCGGcGCgcaggGCGCCGCGcGGGa -3' miRNA: 3'- -CGCUaCCGGCC-CGg----CGCGGCGC-CCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 127204 | 0.73 | 0.157998 |
Target: 5'- cGCGAacuCCGGcGCgGCGCgCGCGGGAGg -3' miRNA: 3'- -CGCUaccGGCC-CGgCGCG-GCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 118679 | 0.73 | 0.161813 |
Target: 5'- gGCGGggguugGGCCGGGCCGCaGCCcCGGcuGGGu -3' miRNA: 3'- -CGCUa-----CCGGCCCGGCG-CGGcGCC--CUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 134530 | 0.73 | 0.165711 |
Target: 5'- gGCGcgGGCCGcGcGCCGCugcggagcgGCCGCGGaGGGc -3' miRNA: 3'- -CGCuaCCGGC-C-CGGCG---------CGGCGCC-CUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 18508 | 0.73 | 0.169693 |
Target: 5'- cGCGGcuGCCGaGGCCaGCGCUGCGGGc- -3' miRNA: 3'- -CGCUacCGGC-CCGG-CGCGGCGCCCuc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 133214 | 0.73 | 0.154264 |
Target: 5'- gGCGGcccgagUGGCC--GCCGCGCCGCGGcGGGc -3' miRNA: 3'- -CGCU------ACCGGccCGGCGCGGCGCC-CUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 124435 | 0.74 | 0.147035 |
Target: 5'- gGCGGcgcuUGGCCggcgcGGGCCGCGCC-CGGGc- -3' miRNA: 3'- -CGCU----ACCGG-----CCCGGCGCGGcGCCCuc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 132709 | 0.74 | 0.133498 |
Target: 5'- gGCGgcGGCCcuGCCGgcCGCCGCGGGGGc -3' miRNA: 3'- -CGCuaCCGGccCGGC--GCGGCGCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 48820 | 0.74 | 0.136771 |
Target: 5'- gGgGAUGuCCGGGCCuuGCCGCGcGGGGg -3' miRNA: 3'- -CgCUACcGGCCCGGcgCGGCGC-CCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 125329 | 0.74 | 0.140117 |
Target: 5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3' miRNA: 3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 80817 | 0.74 | 0.140117 |
Target: 5'- gGCGAaGGCCGcGcGCCGCGaCUGgGGGGGc -3' miRNA: 3'- -CGCUaCCGGC-C-CGGCGC-GGCgCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 131128 | 0.74 | 0.140117 |
Target: 5'- cGCGAgaggcggGcGCCGGGCCcgGCGCCccGCGGGGc -3' miRNA: 3'- -CGCUa------C-CGGCCCGG--CGCGG--CGCCCUc -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 96863 | 0.74 | 0.143538 |
Target: 5'- gGCGGUGGgCGGcgguCCGCGCUG-GGGAGg -3' miRNA: 3'- -CGCUACCgGCCc---GGCGCGGCgCCCUC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 52588 | 0.74 | 0.143538 |
Target: 5'- gGCGgcGGCCGaGGCCGaGCCcGCGGGcGg -3' miRNA: 3'- -CGCuaCCGGC-CCGGCgCGG-CGCCCuC- -5' |
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6670 | 3' | -66.1 | NC_001847.1 | + | 53862 | 0.74 | 0.143538 |
Target: 5'- gGCGcUGG-CGGcGCCGacCGCCGCGGGGGc -3' miRNA: 3'- -CGCuACCgGCC-CGGC--GCGGCGCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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