miRNA display CGI


Results 41 - 60 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 1717 0.66 0.426342
Target:  5'- aCGAUcaGCCGccGCCGCGCCGCGGc-- -3'
miRNA:   3'- cGCUAc-CGGCc-CGGCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 52893 0.66 0.449121
Target:  5'- gGCGAUGGCCaguccuagguccgcGGGCaGCGgCuCGGGGc -3'
miRNA:   3'- -CGCUACCGG--------------CCCGgCGCgGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 4337 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 65527 0.66 0.426342
Target:  5'- uGCGGccGCCcGGCCGCGCCGCu---- -3'
miRNA:   3'- -CGCUacCGGcCCGGCGCGGCGcccuc -5'
6670 3' -66.1 NC_001847.1 + 28868 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 54360 0.67 0.386035
Target:  5'- gGCGuguauaaaGGCCGGGucgucccgguCCGCGCCgGCGcGGAc -3'
miRNA:   3'- -CGCua------CCGGCCC----------GGCGCGG-CGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 115493 0.66 0.468169
Target:  5'- cCGgcGGCCGGGCCcgcaagcggccgcGCGCCGacgccggcgcccCGGGc- -3'
miRNA:   3'- cGCuaCCGGCCCGG-------------CGCGGC------------GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 46924 0.67 0.393893
Target:  5'- cGCGucgGGCCcgggcuccGGGCCGCG-UGCGGcGAa -3'
miRNA:   3'- -CGCua-CCGG--------CCCGGCGCgGCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 54647 0.67 0.393893
Target:  5'- cGCGAgcGGCaGcGCCGCGCUGCGGaacGGGg -3'
miRNA:   3'- -CGCUa-CCGgCcCGGCGCGGCGCC---CUC- -5'
6670 3' -66.1 NC_001847.1 + 44276 0.67 0.409107
Target:  5'- gGCGAUcuaccacaccggcGGCgCGGcGCgGCGCgGCGGGc- -3'
miRNA:   3'- -CGCUA-------------CCG-GCC-CGgCGCGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 12904 0.67 0.409918
Target:  5'- cGCGGaaGCgCGcGCCGUgccGCCGCGGGGGc -3'
miRNA:   3'- -CGCUacCG-GCcCGGCG---CGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 67567 0.67 0.41726
Target:  5'- gGCGGUucGCCGaGGCuuuggccCGCGCCGaucuGGGAGa -3'
miRNA:   3'- -CGCUAc-CGGC-CCG-------GCGCGGCg---CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132671 0.67 0.418081
Target:  5'- aCGgcGGCgGGGgCGcCGCCGCccgcucgaucGGGAGc -3'
miRNA:   3'- cGCuaCCGgCCCgGC-GCGGCG----------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 129020 0.66 0.434699
Target:  5'- cCGAUGGCggcgaggcgcuCGcGCCGCGCCucGCGGGc- -3'
miRNA:   3'- cGCUACCG-----------GCcCGGCGCGG--CGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 127336 0.66 0.442301
Target:  5'- cCGAggcGGCCGGcuGCCGCggcagggGCgGCGGGGc -3'
miRNA:   3'- cGCUa--CCGGCC--CGGCG-------CGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 1411 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 71380 0.66 0.44315
Target:  5'- cGCGGUcuccgGGCCuGGcCCGCGCCGCcaGGcGGc -3'
miRNA:   3'- -CGCUA-----CCGGcCC-GGCGCGGCG--CC-CUc -5'
6670 3' -66.1 NC_001847.1 + 108070 0.66 0.451693
Target:  5'- aGCGugGGCgCGGuGCCGC-CCGgGGGGc -3'
miRNA:   3'- -CGCuaCCG-GCC-CGGCGcGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 125492 0.66 0.451693
Target:  5'- cGCGAggacgcccGGCugcucgagcggCGGGCCgGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUa-------CCG-----------GCCCGG-CGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 99203 0.66 0.460325
Target:  5'- cGCGA-GGC--GGCCGCGCgGCGGc-- -3'
miRNA:   3'- -CGCUaCCGgcCCGGCGCGgCGCCcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.