miRNA display CGI


Results 41 - 60 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 64464 0.78 0.381584
Target:  5'- cCCGCGGCGGCGCg-----GgGGGCCGa -3'
miRNA:   3'- -GGUGCCGUUGCGaauucaUgCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 83037 0.79 0.373264
Target:  5'- cCCGCGGCcgcuaguGCGCUUGGGccgcgGCGcGGCCGa -3'
miRNA:   3'- -GGUGCCGu------UGCGAAUUCa----UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 34147 0.81 0.283287
Target:  5'- gCCGCGGCGagcGCGCUgcgcgaggcggcUGAGgcgcUGCGGGCCGg -3'
miRNA:   3'- -GGUGCCGU---UGCGA------------AUUC----AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 124429 0.81 0.276617
Target:  5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 6966 0.84 0.191128
Target:  5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 19879 0.76 0.490414
Target:  5'- aUCAUGGCGGCGCUg----GCGGGCgCGa -3'
miRNA:   3'- -GGUGCCGUUGCGAauucaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 26026 0.76 0.490414
Target:  5'- gUAUGGCGGCaGCaaaAGGUGCGGGCCa -3'
miRNA:   3'- gGUGCCGUUG-CGaa-UUCAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 34609 0.74 0.632324
Target:  5'- gCGCGGCGGCGCgccgaggAAGUcCGGcGCCu -3'
miRNA:   3'- gGUGCCGUUGCGaa-----UUCAuGCC-CGGc -5'
6671 5' -53.7 NC_001847.1 + 36166 0.74 0.632324
Target:  5'- gCUGCaGGCAACGCUUGcggcGGUGCGcggcgaGGCCGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAU----UCAUGC------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 27742 0.74 0.630249
Target:  5'- gCCGCGGCGGCGgUUGcggcggggggcuGUGCGGGgCGu -3'
miRNA:   3'- -GGUGCCGUUGCgAAUu-----------CAUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 105957 0.74 0.62195
Target:  5'- gCC-CGGCGGCGCcggcGGcgcgGCGGGCCGc -3'
miRNA:   3'- -GGuGCCGUUGCGaau-UCa---UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 105350 0.74 0.617802
Target:  5'- aCC-CGGCGGCGCUcccgccgcCGGGCCGg -3'
miRNA:   3'- -GGuGCCGUUGCGAauucau--GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 50366 0.74 0.611584
Target:  5'- gCGCGGcCGACGCUaAGG-ACGGcGCCGc -3'
miRNA:   3'- gGUGCC-GUUGCGAaUUCaUGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 130493 0.74 0.601234
Target:  5'- aCGCGGCGcgucgggcugagGCGCgcGAGcgccgGCGGGCCGc -3'
miRNA:   3'- gGUGCCGU------------UGCGaaUUCa----UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 18187 0.74 0.590907
Target:  5'- cCCAUGGCGgacGCGCggcgAGGUcuCGGGCUGg -3'
miRNA:   3'- -GGUGCCGU---UGCGaa--UUCAu-GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 48850 0.75 0.570353
Target:  5'- gCCuCGGCcGCGCggcgcgAGGUACGGGuuGa -3'
miRNA:   3'- -GGuGCCGuUGCGaa----UUCAUGCCCggC- -5'
6671 5' -53.7 NC_001847.1 + 124958 0.75 0.56014
Target:  5'- gCgGCGGCGGCGCgcaaAAGccggcgcaGCGGGCCGg -3'
miRNA:   3'- -GgUGCCGUUGCGaa--UUCa-------UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 56079 0.75 0.539873
Target:  5'- gCGCGGCugAGCGCgcccgGGGUGCGgGGCUGg -3'
miRNA:   3'- gGUGCCG--UUGCGaa---UUCAUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 100504 0.75 0.539873
Target:  5'- aCACGGCggUGCgguguggUGGGcUGCGGGUCGc -3'
miRNA:   3'- gGUGCCGuuGCGa------AUUC-AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 69239 0.75 0.533841
Target:  5'- gCCGCGGCAACGCUggccuacuacGCGcGGCUGg -3'
miRNA:   3'- -GGUGCCGUUGCGAauuca-----UGC-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.