miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 60856 0.66 0.966717
Target:  5'- uCCGCGcccgccgaggccagcGCAGCGCgc--GcGCGGGCCc -3'
miRNA:   3'- -GGUGC---------------CGUUGCGaauuCaUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 134205 0.66 0.95457
Target:  5'- -aGCGGC-GCGC------GCGGGCCGa -3'
miRNA:   3'- ggUGCCGuUGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2758 0.66 0.958041
Target:  5'- gCGCGGCGGCGC-------CGGcGCCGg -3'
miRNA:   3'- gGUGCCGUUGCGaauucauGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 28242 0.66 0.962031
Target:  5'- aCCgACGcCGACGC-UGAGgcCGaGGCCGa -3'
miRNA:   3'- -GG-UGCcGUUGCGaAUUCauGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134480 0.66 0.962031
Target:  5'- gCGCGGcCAACGaagUGcacggguguAGUGUGGGCCGu -3'
miRNA:   3'- gGUGCC-GUUGCga-AU---------UCAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 54235 0.66 0.95457
Target:  5'- gCCACGGC--CGCUUGGGc---GGCCa -3'
miRNA:   3'- -GGUGCCGuuGCGAAUUCaugcCCGGc -5'
6671 5' -53.7 NC_001847.1 + 31563 0.66 0.95457
Target:  5'- gC-CGGCGcCGCc--GGcgGCGGGCCGg -3'
miRNA:   3'- gGuGCCGUuGCGaauUCa-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 50520 0.66 0.965422
Target:  5'- gCCGCGGCAugGCcccgcucgAAGgcgacgcaGCGGcGCUGc -3'
miRNA:   3'- -GGUGCCGUugCGaa------UUCa-------UGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 71403 0.66 0.958415
Target:  5'- gCCGCcaGGCGGCGCUgu--UGCucGGCCGg -3'
miRNA:   3'- -GGUG--CCGUUGCGAauucAUGc-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 61435 0.66 0.958415
Target:  5'- cCCGCGGCcGCGCcgc----CGGGCgCGg -3'
miRNA:   3'- -GGUGCCGuUGCGaauucauGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 32334 0.66 0.965422
Target:  5'- gCGCGGCGcgGCGCg-GAGg--GGGCCc -3'
miRNA:   3'- gGUGCCGU--UGCGaaUUCaugCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 58459 0.66 0.965422
Target:  5'- gCCGCaGCGccGCGCgcgUGA--ACGGGUCGa -3'
miRNA:   3'- -GGUGcCGU--UGCGa--AUUcaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 70788 0.66 0.95457
Target:  5'- -gGCGGCu-CGCUUcgcgGCGgGGCCGg -3'
miRNA:   3'- ggUGCCGuuGCGAAuucaUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 32085 0.66 0.95457
Target:  5'- cCCugGGCGccggGCGUcgGGGcGCGaGGCCc -3'
miRNA:   3'- -GGugCCGU----UGCGaaUUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 5565 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 52488 0.66 0.962031
Target:  5'- gCGCGGCGcgccGCGCUcgcGGGUuCGGGUgGc -3'
miRNA:   3'- gGUGCCGU----UGCGAa--UUCAuGCCCGgC- -5'
6671 5' -53.7 NC_001847.1 + 57907 0.66 0.962031
Target:  5'- cCCGC-GCGAcCGCgccAAGUcCGGGCCc -3'
miRNA:   3'- -GGUGcCGUU-GCGaa-UUCAuGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 107140 0.66 0.965422
Target:  5'- gCGCGGCAcgccgcGCGCUgcAGcGCGGcCCa -3'
miRNA:   3'- gGUGCCGU------UGCGAauUCaUGCCcGGc -5'
6671 5' -53.7 NC_001847.1 + 132750 0.66 0.961326
Target:  5'- gCCACGGCcgAGCGCgucaccgccGUcuucGCGGGCgCGc -3'
miRNA:   3'- -GGUGCCG--UUGCGaauu-----CA----UGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 44815 0.66 0.958415
Target:  5'- gCGCGGCAccGCGCcccAGUcggcaAUGGGCgCGg -3'
miRNA:   3'- gGUGCCGU--UGCGaauUCA-----UGCCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.