Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6672 | 3' | -44.2 | NC_001847.1 | + | 82317 | 0.66 | 0.999998 |
Target: 5'- ----aAUGCgggcggGGUCGcCGGCGACGAg -3' miRNA: 3'- cuaaaUAUGaa----CCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 81786 | 0.66 | 0.999996 |
Target: 5'- ----gGUGCccgcGGCCGcCAGCAGCGc -3' miRNA: 3'- cuaaaUAUGaa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 78341 | 0.66 | 0.999998 |
Target: 5'- ------gGCUUGGgCGccgCGGCGGCGAa -3' miRNA: 3'- cuaaauaUGAACCgGCa--GUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 67293 | 0.67 | 0.999978 |
Target: 5'- ------gACUuggUGGCCG-CGGCGACGGc -3' miRNA: 3'- cuaaauaUGA---ACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 66041 | 0.67 | 0.999984 |
Target: 5'- gGAggUAUACgc-GCaCGUCGGCGGCGGc -3' miRNA: 3'- -CUaaAUAUGaacCG-GCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 64709 | 0.74 | 0.989439 |
Target: 5'- ------cGCgcGGCCGUCGACAACGc -3' miRNA: 3'- cuaaauaUGaaCCGGCAGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 62147 | 0.67 | 0.999978 |
Target: 5'- ----cGUGCgcaUGGCCG-CGGCGGCGu -3' miRNA: 3'- cuaaaUAUGa--ACCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59675 | 0.66 | 0.999995 |
Target: 5'- ----cGUGCgcucUGGCCccucccccccgGUCGGCAGCGGg -3' miRNA: 3'- cuaaaUAUGa---ACCGG-----------CAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59233 | 0.71 | 0.999074 |
Target: 5'- ------cGCgucGGCCGUCGGCGAUGGc -3' miRNA: 3'- cuaaauaUGaa-CCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 58281 | 0.76 | 0.968412 |
Target: 5'- ---aUGUGCUcGGCCG-CGGCGACGGc -3' miRNA: 3'- cuaaAUAUGAaCCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 56727 | 0.66 | 0.999999 |
Target: 5'- ----------cGGCCGaugcUCAGCAACGAg -3' miRNA: 3'- cuaaauaugaaCCGGC----AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 54524 | 0.66 | 0.999999 |
Target: 5'- cGGUggg-GCggGGCCGUCcgggggcgcaGACGGCGGg -3' miRNA: 3'- -CUAaauaUGaaCCGGCAG----------UUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 53869 | 0.66 | 0.999998 |
Target: 5'- ----gGUGCUguggggcGGCCGUCucuccggaaAGCAGCGGc -3' miRNA: 3'- cuaaaUAUGAa------CCGGCAG---------UUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 52202 | 0.67 | 0.999978 |
Target: 5'- ------gGCcUGGCCGcgggucgcggccUCGACAGCGAg -3' miRNA: 3'- cuaaauaUGaACCGGC------------AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 35891 | 0.67 | 0.999984 |
Target: 5'- ---aUAUACUcccGcGCCGgcugCGACAACGAg -3' miRNA: 3'- cuaaAUAUGAa--C-CGGCa---GUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 34557 | 0.68 | 0.999924 |
Target: 5'- -----cUGCUcGGCCGcugCAGCGGCGGc -3' miRNA: 3'- cuaaauAUGAaCCGGCa--GUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 34461 | 0.71 | 0.998598 |
Target: 5'- ------cGCggUGGCCGcCGGCGGCGAg -3' miRNA: 3'- cuaaauaUGa-ACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 33221 | 0.71 | 0.997929 |
Target: 5'- uGAUggcgAUGC-UGGCCGagugcggcuUCGACGACGAc -3' miRNA: 3'- -CUAaa--UAUGaACCGGC---------AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 31217 | 0.67 | 0.999984 |
Target: 5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3' miRNA: 3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 27720 | 0.66 | 0.999997 |
Target: 5'- ------gGCaaGGgCGUCAGCGGCGGa -3' miRNA: 3'- cuaaauaUGaaCCgGCAGUUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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